Pascual-Montano A - Search Results

1

SPACE: an algorithm to predict and quantify alternatively spliced isoforms using microarrays.

Anton MA, Gorostiaga D, Guruceaga E, Segura V, Carmona-Saez P, Pascual-Montano A, Pio R, Montuenga LM, Rubio A. Anton MA, et al. Genome Biol. 2008;9(2):R46. doi: 10.1186/gb-2008-9-2-r46. Epub 2008 Feb 29. Genome Biol. 2008. PMID: 18312629 Free PMC article.

2

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.

Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A. Carmona-Saez P, et al. Genome Biol. 2007;8(1):R3. doi: 10.1186/gb-2007-8-1-r3. Genome Biol. 2007. PMID: 17204154 Free PMC article.

3

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.

Abascal F, Carmona-Saez P, Carazo JM, Pascual-Montano A. Abascal F, et al. Bioinformatics. 2008 May 1;24(9):1208-9. doi: 10.1093/bioinformatics/btn094. Epub 2008 Mar 12. Bioinformatics. 2008. PMID: 18339638

4

Quantification of miRNA-mRNA interactions.

Muniategui A, Nogales-Cadenas R, Vázquez M, Aranguren XL, Agirre X, Luttun A, Prosper F, Pascual-Montano A, Rubio A. Muniategui A, et al. PLoS One. 2012;7(2):e30766. doi: 10.1371/journal.pone.0030766. Epub 2012 Feb 14. PLoS One. 2012. PMID: 22348024 Free PMC article.

5

Integrated analysis of gene expression by Association Rules Discovery.

Carmona-Saez P, Chagoyen M, Rodriguez A, Trelles O, Carazo JM, Pascual-Montano A. Carmona-Saez P, et al. BMC Bioinformatics. 2006 Feb 7;7:54. doi: 10.1186/1471-2105-7-54. BMC Bioinformatics. 2006. PMID: 16464256 Free PMC article.

6

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Pascual-Montano A, Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Marqui RD. Pascual-Montano A, et al. BMC Bioinformatics. 2006 Jul 28;7:366. doi: 10.1186/1471-2105-7-366. BMC Bioinformatics. 2006. PMID: 16875499 Free PMC article.

7

Biclustering of gene expression data by Non-smooth Non-negative Matrix Factorization.

Carmona-Saez P, Pascual-Marqui RD, Tirado F, Carazo JM, Pascual-Montano A. Carmona-Saez P, et al. BMC Bioinformatics. 2006 Feb 17;7:78. doi: 10.1186/1471-2105-7-78. BMC Bioinformatics. 2006. PMID: 16503973 Free PMC article.

8

Discovering semantic features in the literature: a foundation for building functional associations.

Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A. Chagoyen M, et al. BMC Bioinformatics. 2006 Jan 26;7:41. doi: 10.1186/1471-2105-7-41. BMC Bioinformatics. 2006. PMID: 16438716 Free PMC article.

9

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.

Vazquez M, Nogales-Cadenas R, Arroyo J, Botías P, García R, Carazo JM, Tirado F, Pascual-Montano A, Carmona-Saez P. Vazquez M, et al. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W228-32. doi: 10.1093/nar/gkq476. Epub 2010 May 31. Nucleic Acids Res. 2010. PMID: 20513648 Free PMC article.

10

A literature-based similarity metric for biological processes.

Chagoyen M, Carmona-Saez P, Gil C, Carazo JM, Pascual-Montano A. Chagoyen M, et al. BMC Bioinformatics. 2006 Jul 26;7:363. doi: 10.1186/1471-2105-7-363. BMC Bioinformatics. 2006. PMID: 16872502 Free PMC article.

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