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Predicting conserved protein motifs with Sub-HMMs.
Horan K, Shelton CR, Girke T. Horan K, et al. BMC Bioinformatics. 2010 Apr 26;11:205. doi: 10.1186/1471-2105-11-205. BMC Bioinformatics. 2010. PMID: 20420695 Free PMC article.
BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows.
Strepis N, Dollee D, Vrins D, Vanneste K, Bogaerts B, Carrillo C, Bharat A, Horan K, Sherry NL, Seemann T, Howden BP, Hiltemann S, Chindelevitch L, Stubbs AP, Hays JP. Strepis N, et al. Among authors: horan k. BMC Genomics. 2025 Jan 10;26(1):27. doi: 10.1186/s12864-024-11158-5. BMC Genomics. 2025. PMID: 39794695
Parameters for one health genomic surveillance of Escherichia coli from Australia.
Watt AE, Cummins ML, Donato CM, Wirth W, Porter AF, Andersson P, Donner E; Australian Pathogen Genomics One Health Working Group; Jennison AV, Seemann T, Djordjevic SP, Howden BP. Watt AE, et al. Nat Commun. 2025 Jan 2;16(1):17. doi: 10.1038/s41467-024-55103-2. Nat Commun. 2025. PMID: 39747833 Free PMC article.
Meningococcal C Disease Outbreak Caused by Multidrug-Resistant Neisseria meningitidis, Fiji.
Strobel AG, Sahukhan A, Ratu A, Kailawadoko J, Koroituku I, Singh S, McEwen S, Baleivanualala S, Wilmot M, Matanitobua S, Stevens K, Vesikula A, Cabemaiwai T, Cooper R, Taufa M, Tadrau J, Horan K, Faktaufon D, Howden BP, Rafai E. Strobel AG, et al. Among authors: horan k. Emerg Infect Dis. 2025 Jan;31(1):32-40. doi: 10.3201/eid3101.240476. Emerg Infect Dis. 2025. PMID: 39714270 Free PMC article.
150 results