Baumgartner WA - Search Results

1

Improving protein function prediction methods with integrated literature data.

Gabow AP, Leach SM, Baumgartner WA, Hunter LE, Goldberg DS. Gabow AP, et al. Among authors: baumgartner wa. BMC Bioinformatics. 2008 Apr 15;9:198. doi: 10.1186/1471-2105-9-198. BMC Bioinformatics. 2008. PMID: 18412966 Free PMC article.

2

Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.

Johnson HL, Cohen KB, Baumgartner WA Jr, Lu Z, Bada M, Kester T, Kim H, Hunter L. Johnson HL, et al. Among authors: baumgartner wa jr. Pac Symp Biocomput. 2006:28-39. Pac Symp Biocomput. 2006. PMID: 17094225 Free PMC article.

3

MutationFinder: a high-performance system for extracting point mutation mentions from text.

Caporaso JG, Baumgartner WA Jr, Randolph DA, Cohen KB, Hunter L. Caporaso JG, et al. Among authors: baumgartner wa jr. Bioinformatics. 2007 Jul 15;23(14):1862-5. doi: 10.1093/bioinformatics/btm235. Epub 2007 May 11. Bioinformatics. 2007. PMID: 17495998 Free PMC article.

4

Manual curation is not sufficient for annotation of genomic databases.

Baumgartner WA Jr, Cohen KB, Fox LM, Acquaah-Mensah G, Hunter L. Baumgartner WA Jr, et al. Bioinformatics. 2007 Jul 1;23(13):i41-8. doi: 10.1093/bioinformatics/btm229. Bioinformatics. 2007. PMID: 17646325 Free PMC article.

5

Corpus refactoring: a feasibility study.

Johnson HL, Baumgartner WA Jr, Krallinger M, Cohen KB, Hunter L. Johnson HL, et al. Among authors: baumgartner wa jr. J Biomed Discov Collab. 2007 Sep 13;2:4. doi: 10.1186/1747-5333-2-4. J Biomed Discov Collab. 2007. PMID: 17854502 Free PMC article.

6

Rapid pattern development for concept recognition systems: application to point mutations.

Caporaso JG, Baumgartner WA, Randolph DA, Cohen KB, Hunter L. Caporaso JG, et al. Among authors: baumgartner wa. J Bioinform Comput Biol. 2007 Dec;5(6):1233-59. doi: 10.1142/s0219720007003144. J Bioinform Comput Biol. 2007. PMID: 18172927

7

An open-source framework for large-scale, flexible evaluation of biomedical text mining systems.

Baumgartner WA Jr, Cohen KB, Hunter L. Baumgartner WA Jr, et al. J Biomed Discov Collab. 2008 Jan 29;3:1. doi: 10.1186/1747-5333-3-1. J Biomed Discov Collab. 2008. PMID: 18230184 Free PMC article.

8

OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.

Hunter L, Lu Z, Firby J, Baumgartner WA Jr, Johnson HL, Ogren PV, Cohen KB. Hunter L, et al. Among authors: baumgartner wa jr. BMC Bioinformatics. 2008 Jan 31;9:78. doi: 10.1186/1471-2105-9-78. BMC Bioinformatics. 2008. PMID: 18237434 Free PMC article.

9

Introducing meta-services for biomedical information extraction.

Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo CJ, Hsu CN, Tsai RT, Hung HC, Lau WW, Johnson CA, Saetre R, Yoshida K, Chen YH, Kim S, Shin SY, Zhang BT, Baumgartner WA Jr, Hunter L, Haddow B, Matthews M, Wang X, Ruch P, Ehrler F, Ozgür A, Erkan G, Radev DR, Krauthammer M, Luong T, Hoffmann R, Sander C, Valencia A. Leitner F, et al. Among authors: baumgartner wa jr. Genome Biol. 2008;9 Suppl 2(Suppl 2):S6. doi: 10.1186/gb-2008-9-s2-s6. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834497 Free PMC article.

10

Concept recognition for extracting protein interaction relations from biomedical text.

Baumgartner WA Jr, Lu Z, Johnson HL, Caporaso JG, Paquette J, Lindemann A, White EK, Medvedeva O, Cohen KB, Hunter L. Baumgartner WA Jr, et al. Genome Biol. 2008;9 Suppl 2(Suppl 2):S9. doi: 10.1186/gb-2008-9-s2-s9. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834500 Free PMC article.

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