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Stochastic processes are key determinants of short-term evolution in influenza a virus.
Nelson MI, Simonsen L, Viboud C, Miller MA, Taylor J, George KS, Griesemer SB, Ghedin E, Sengamalay NA, Spiro DJ, Volkov I, Grenfell BT, Lipman DJ, Taubenberger JK, Holmes EC. Nelson MI, et al. Among authors: spiro dj. PLoS Pathog. 2006 Dec;2(12):e125. doi: 10.1371/journal.ppat.0020125. PLoS Pathog. 2006. PMID: 17140286 Free PMC article.
The evolutionary genetics and emergence of avian influenza viruses in wild birds.
Dugan VG, Chen R, Spiro DJ, Sengamalay N, Zaborsky J, Ghedin E, Nolting J, Swayne DE, Runstadler JA, Happ GM, Senne DA, Wang R, Slemons RD, Holmes EC, Taubenberger JK. Dugan VG, et al. Among authors: spiro dj. PLoS Pathog. 2008 May 30;4(5):e1000076. doi: 10.1371/journal.ppat.1000076. PLoS Pathog. 2008. PMID: 18516303 Free PMC article.
Mixed infection and the genesis of influenza virus diversity.
Ghedin E, Fitch A, Boyne A, Griesemer S, DePasse J, Bera J, Zhang X, Halpin RA, Smit M, Jennings L, St George K, Holmes EC, Spiro DJ. Ghedin E, et al. Among authors: spiro dj. J Virol. 2009 Sep;83(17):8832-41. doi: 10.1128/JVI.00773-09. Epub 2009 Jun 24. J Virol. 2009. PMID: 19553313 Free PMC article.
Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.
Ghedin E, Wentworth DE, Halpin RA, Lin X, Bera J, DePasse J, Fitch A, Griesemer S, Hine E, Katzel DA, Overton L, Proudfoot K, Sitz J, Szczypinski B, StGeorge K, Spiro DJ, Holmes EC. Ghedin E, et al. Among authors: spiro dj. J Virol. 2010 Jun;84(11):5715-8. doi: 10.1128/JVI.00018-10. Epub 2010 Mar 17. J Virol. 2010. PMID: 20237080 Free PMC article.
Genome analysis linking recent European and African influenza (H5N1) viruses.
Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly MM, Brown IH, Couacy-Hymann E, De Mia GM, Dung do H, Guercio A, Joannis T, Maken Ali AS, Osmani A, Padalino I, Saad MD, Savić V, Sengamalay NA, Yingst S, Zaborsky J, Zorman-Rojs O, Ghedin E, Capua I. Salzberg SL, et al. Among authors: spiro dj. Emerg Infect Dis. 2007 May;13(5):713-8. doi: 10.3201/eid1305.070013. Emerg Infect Dis. 2007. PMID: 17553249 Free PMC article.
Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance.
Ghedin E, Laplante J, DePasse J, Wentworth DE, Santos RP, Lepow ML, Porter J, Stellrecht K, Lin X, Operario D, Griesemer S, Fitch A, Halpin RA, Stockwell TB, Spiro DJ, Holmes EC, St George K. Ghedin E, et al. Among authors: spiro dj. J Infect Dis. 2011 Jan 15;203(2):168-74. doi: 10.1093/infdis/jiq040. J Infect Dis. 2011. PMID: 21288815 Free PMC article.
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