Janky R - Search Results

1

RSAT: regulatory sequence analysis tools.

Thomas-Chollier M, Sand O, Turatsinze JV, Janky R, Defrance M, Vervisch E, Brohée S, van Helden J. Thomas-Chollier M, et al. Among authors: janky r. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W119-27. doi: 10.1093/nar/gkn304. Epub 2008 May 21. Nucleic Acids Res. 2008. PMID: 18495751 Free PMC article.

2

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.

Brohée S, Faust K, Lima-Mendez G, Sand O, Janky R, Vanderstocken G, Deville Y, van Helden J. Brohée S, et al. Among authors: janky r. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W444-51. doi: 10.1093/nar/gkn336. Epub 2008 Jun 4. Nucleic Acids Res. 2008. PMID: 18524799 Free PMC article.

3

Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences.

Defrance M, Janky R, Sand O, van Helden J. Defrance M, et al. Among authors: janky r. Nat Protoc. 2008;3(10):1589-603. doi: 10.1038/nprot.2008.98. Nat Protoc. 2008. PMID: 18802440

4

Unraveling networks of co-regulated genes on the sole basis of genome sequences.

Brohée S, Janky R, Abdel-Sater F, Vanderstocken G, André B, van Helden J. Brohée S, et al. Among authors: janky r. Nucleic Acids Res. 2011 Aug;39(15):6340-58. doi: 10.1093/nar/gkr264. Epub 2011 May 13. Nucleic Acids Res. 2011. PMID: 21572103 Free PMC article.

5

Discovery of conserved motifs in promoters of orthologous genes in prokaryotes.

Janky R, van Helden J. Janky R, et al. Methods Mol Biol. 2007;395:293-308. doi: 10.1007/978-1-59745-514-5_18. Methods Mol Biol. 2007. PMID: 17993681

6

Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution.

Janky R, van Helden J. Janky R, et al. BMC Bioinformatics. 2008 Jan 23;9:37. doi: 10.1186/1471-2105-9-37. BMC Bioinformatics. 2008. PMID: 18215291 Free PMC article.

7

The aMAZE LightBench: a web interface to a relational database of cellular processes.

Lemer C, Antezana E, Couche F, Fays F, Santolaria X, Janky R, Deville Y, Richelle J, Wodak SJ. Lemer C, et al. Among authors: janky r. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D443-8. doi: 10.1093/nar/gkh139. Nucleic Acids Res. 2004. PMID: 14681453 Free PMC article.

8

iRegulon and i-cisTarget: Reconstructing Regulatory Networks Using Motif and Track Enrichment.

Verfaillie A, Imrichova H, Janky R, Aerts S. Verfaillie A, et al. Among authors: janky r. Curr Protoc Bioinformatics. 2015 Dec 17;52:2.16.1-2.16.39. doi: 10.1002/0471250953.bi0216s52. Curr Protoc Bioinformatics. 2015. PMID: 26678384

9

Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements.

Janky R, Helden Jv, Babu MM. Janky R, et al. Methods. 2009 Jul;48(3):277-86. doi: 10.1016/j.ymeth.2009.04.022. Epub 2009 May 18. Methods. 2009. PMID: 19450688

10

iRegulon: from a gene list to a gene regulatory network using large motif and track collections.

Janky R, Verfaillie A, Imrichová H, Van de Sande B, Standaert L, Christiaens V, Hulselmans G, Herten K, Naval Sanchez M, Potier D, Svetlichnyy D, Kalender Atak Z, Fiers M, Marine JC, Aerts S. Janky R, et al. PLoS Comput Biol. 2014 Jul 24;10(7):e1003731. doi: 10.1371/journal.pcbi.1003731. eCollection 2014 Jul. PLoS Comput Biol. 2014. PMID: 25058159 Free PMC article.

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