Klammer AA - Search Results

1

Rapid and accurate peptide identification from tandem mass spectra.

Park CY, Klammer AA, Käll L, MacCoss MJ, Noble WS. Park CY, et al. Among authors: klammer aa. J Proteome Res. 2008 Jul;7(7):3022-7. doi: 10.1021/pr800127y. Epub 2008 May 28. J Proteome Res. 2008. PMID: 18505281 Free PMC article.

2

Peptide charge state determination for low-resolution tandem mass spectra.

Klammer AA, Wu CC, MacCoss MJ, Noble WS. Klammer AA, et al. Proc IEEE Comput Syst Bioinform Conf. 2005:175-85. doi: 10.1109/csb.2005.44. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447975

3

Effects of modified digestion schemes on the identification of proteins from complex mixtures.

Klammer AA, MacCoss MJ. Klammer AA, et al. J Proteome Res. 2006 Mar;5(3):695-700. doi: 10.1021/pr050315j. J Proteome Res. 2006. PMID: 16512685 Free PMC article.

4

Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions.

Klammer AA, Yi X, MacCoss MJ, Noble WS. Klammer AA, et al. Anal Chem. 2007 Aug 15;79(16):6111-8. doi: 10.1021/ac070262k. Epub 2007 Jul 11. Anal Chem. 2007. PMID: 17622186

5

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.

Klammer AA, Reynolds SM, Bilmes JA, MacCoss MJ, Noble WS. Klammer AA, et al. Bioinformatics. 2008 Jul 1;24(13):i348-56. doi: 10.1093/bioinformatics/btn189. Bioinformatics. 2008. PMID: 18586734 Free PMC article.

6

Statistical calibration of the SEQUEST XCorr function.

Klammer AA, Park CY, Noble WS. Klammer AA, et al. J Proteome Res. 2009 Apr;8(4):2106-13. doi: 10.1021/pr8011107. J Proteome Res. 2009. PMID: 19275164 Free PMC article.

7

Quantitative comparison of proteomic data quality between a 2D and 3D quadrupole ion trap.

Blackler AR, Klammer AA, MacCoss MJ, Wu CC. Blackler AR, et al. Among authors: klammer aa. Anal Chem. 2006 Feb 15;78(4):1337-44. doi: 10.1021/ac051486a. Anal Chem. 2006. PMID: 16478131

8

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany.

Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK. Rasko DA, et al. N Engl J Med. 2011 Aug 25;365(8):709-17. doi: 10.1056/NEJMoa1106920. Epub 2011 Jul 27. N Engl J Med. 2011. PMID: 21793740 Free PMC article.

9

A hybrid approach for the automated finishing of bacterial genomes.

Bashir A, Klammer A, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE. Bashir A, et al. Nat Biotechnol. 2012 Jul 1;30(7):701-707. doi: 10.1038/nbt.2288. Nat Biotechnol. 2012. PMID: 22750883 Free PMC article.

10

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J. Chin CS, et al. Among authors: klammer aa. Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5. Nat Methods. 2013. PMID: 23644548

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