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Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mortazavi A, et al. Among authors: schaeffer l. Nat Methods. 2008 Jul;5(7):621-8. doi: 10.1038/nmeth.1226. Epub 2008 May 30. Nat Methods. 2008. PMID: 18516045
Scaffolding a Caenorhabditis nematode genome with RNA-seq.
Mortazavi A, Schwarz EM, Williams B, Schaeffer L, Antoshechkin I, Wold BJ, Sternberg PW. Mortazavi A, et al. Among authors: schaeffer l. Genome Res. 2010 Dec;20(12):1740-7. doi: 10.1101/gr.111021.110. Epub 2010 Oct 27. Genome Res. 2010. PMID: 20980554 Free PMC article.
Updating RNA-Seq analyses after re-annotation.
Roberts A, Schaeffer L, Pachter L. Roberts A, et al. Among authors: schaeffer l. Bioinformatics. 2013 Jul 1;29(13):1631-7. doi: 10.1093/bioinformatics/btt197. Epub 2013 May 14. Bioinformatics. 2013. PMID: 23677943 Free PMC article.
Pseudoalignment for metagenomic read assignment.
Schaeffer L, Pimentel H, Bray N, Melsted P, Pachter L. Schaeffer L, et al. Bioinformatics. 2017 Jul 15;33(14):2082-2088. doi: 10.1093/bioinformatics/btx106. Bioinformatics. 2017. PMID: 28334086 Free PMC article.
Human intestinal tissue with adult stem cell properties derived from pluripotent stem cells.
Forster R, Chiba K, Schaeffer L, Regalado SG, Lai CS, Gao Q, Kiani S, Farin HF, Clevers H, Cost GJ, Chan A, Rebar EJ, Urnov FD, Gregory PD, Pachter L, Jaenisch R, Hockemeyer D. Forster R, et al. Among authors: schaeffer l. Stem Cell Reports. 2014 Jun 3;2(6):838-52. doi: 10.1016/j.stemcr.2014.05.001. eCollection 2014 Jun 3. Stem Cell Reports. 2014. PMID: 24936470 Free PMC article.
Marmosets as model systems for the study of Alzheimer's disease and related dementias: Substantiation of physiological tau 3R and 4R isoform expression and phosphorylation.
Huhe H, Shapley SM, Duong DM, Wu F, Ha SK, Choi SH, Kofler J, Mou Y, Guimaraes TR, Thathiah A, Watson CM, Schaeffer LKH, Carter GW, Seyfried NT, Silva AC, Sukoff Rizzo SJ. Huhe H, et al. Among authors: schaeffer lkh. Alzheimers Dement. 2024 Nov 19. doi: 10.1002/alz.14366. Online ahead of print. Alzheimers Dement. 2024. PMID: 39559898
360 results