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Page 1
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.
Timilsena PR, Barrett CF, Piñeyro-Nelson A, Wafula EK, Ayyampalayam S, McNeal JR, Yukawa T, Givnish TJ, Graham SW, Pires JC, Davis JI, Ané C, Stevenson DW, Leebens-Mack J, Martínez-Salas E, Álvarez-Buylla ER, dePamphilis CW. Timilsena PR, et al. Among authors: ane c. Genome Biol Evol. 2023 Jan 4;15(1):evac183. doi: 10.1093/gbe/evac183. Genome Biol Evol. 2023. PMID: 36582124 Free PMC article.
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.
Timilsena PR, Wafula EK, Barrett CF, Ayyampalayam S, McNeal JR, Rentsch JD, McKain MR, Heyduk K, Harkess A, Villegente M, Conran JG, Illing N, Fogliani B, Ané C, Pires JC, Davis JI, Zomlefer WB, Stevenson DW, Graham SW, Givnish TJ, Leebens-Mack J, dePamphilis CW. Timilsena PR, et al. Among authors: ane c. Front Plant Sci. 2022 Nov 22;13:876779. doi: 10.3389/fpls.2022.876779. eCollection 2022. Front Plant Sci. 2022. PMID: 36483967 Free PMC article.
Bayesian estimation of concordance among gene trees.
Ané C, Larget B, Baum DA, Smith SD, Rokas A. Ané C, et al. Mol Biol Evol. 2007 Feb;24(2):412-26. doi: 10.1093/molbev/msl170. Epub 2006 Nov 9. Mol Biol Evol. 2007. PMID: 17095535
Fine-scale phylogenetic discordance across the house mouse genome.
White MA, Ané C, Dewey CN, Larget BR, Payseur BA. White MA, et al. Among authors: ane c. PLoS Genet. 2009 Nov;5(11):e1000729. doi: 10.1371/journal.pgen.1000729. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936022 Free PMC article.
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.
Larget BR, Kotha SK, Dewey CN, Ané C. Larget BR, et al. Among authors: ane c. Bioinformatics. 2010 Nov 15;26(22):2910-1. doi: 10.1093/bioinformatics/btq539. Epub 2010 Sep 21. Bioinformatics. 2010. PMID: 20861028
MOTIVATION: BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. ...AVAILAB …
MOTIVATION: BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of gene …
Statistical evidence for common ancestry: Application to primates.
Baum DA, Ané C, Larget B, Solís-Lemus C, Ho LS, Boone P, Drummond CP, Bontrager M, Hunter SJ, Saucier W. Baum DA, et al. Among authors: ane c. Evolution. 2016 Jun;70(6):1354-63. doi: 10.1111/evo.12934. Epub 2016 May 30. Evolution. 2016. PMID: 27139421
57 results