Nakhleh L - Search Results

1

Efficient inference of bacterial strain trees from genome-scale multilocus data.

Than C, Sugino R, Innan H, Nakhleh L. Than C, et al. Among authors: nakhleh l. Bioinformatics. 2008 Jul 1;24(13):i123-31. doi: 10.1093/bioinformatics/btn149. Bioinformatics. 2008. PMID: 18586704 Free PMC article.

2

Reconstructing phylogenetic networks using maximum parsimony.

Nakhleh L, Jin G, Zhao F, Mellor-Crummey J. Nakhleh L, et al. Proc IEEE Comput Syst Bioinform Conf. 2005:93-102. doi: 10.1109/csb.2005.47. Proc IEEE Comput Syst Bioinform Conf. 2005. PMID: 16447967

3

Maximum likelihood of phylogenetic networks.

Jin G, Nakhleh L, Snir S, Tuller T. Jin G, et al. Among authors: nakhleh l. Bioinformatics. 2006 Nov 1;22(21):2604-11. doi: 10.1093/bioinformatics/btl452. Epub 2006 Aug 23. Bioinformatics. 2006. PMID: 16928736

4

Efficient parsimony-based methods for phylogenetic network reconstruction.

Jin G, Nakhleh L, Snir S, Tuller T. Jin G, et al. Among authors: nakhleh l. Bioinformatics. 2007 Jan 15;23(2):e123-8. doi: 10.1093/bioinformatics/btl313. Bioinformatics. 2007. PMID: 17237079

5

Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutions.

Than C, Ruths D, Innan H, Nakhleh L. Than C, et al. Among authors: nakhleh l. J Comput Biol. 2007 May;14(4):517-35. doi: 10.1089/cmb.2007.A010. J Comput Biol. 2007. PMID: 17572027 Free article.

6

PRec-I-DCM3: a parallel framework for fast and accurate large-scale phylogeny reconstruction.

Dotsenko Y, Coarfa C, Nakhleh L, Mellor-Crummey J, Roshan U. Dotsenko Y, et al. Among authors: nakhleh l. Int J Bioinform Res Appl. 2006;2(4):407-19. doi: 10.1504/IJBRA.2006.011039. Int J Bioinform Res Appl. 2006. PMID: 18048181

7

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.

Than C, Ruths D, Nakhleh L. Than C, et al. Among authors: nakhleh l. BMC Bioinformatics. 2008 Jul 28;9:322. doi: 10.1186/1471-2105-9-322. BMC Bioinformatics. 2008. PMID: 18662388 Free PMC article.

8

GS2: an efficiently computable measure of GO-based similarity of gene sets.

Ruths T, Ruths D, Nakhleh L. Ruths T, et al. Among authors: nakhleh l. Bioinformatics. 2009 May 1;25(9):1178-84. doi: 10.1093/bioinformatics/btp128. Epub 2009 Mar 16. Bioinformatics. 2009. PMID: 19289444 Free PMC article.

9

Species tree inference by minimizing deep coalescences.

Than C, Nakhleh L. Than C, et al. Among authors: nakhleh l. PLoS Comput Biol. 2009 Sep;5(9):e1000501. doi: 10.1371/journal.pcbi.1000501. Epub 2009 Sep 11. PLoS Comput Biol. 2009. PMID: 19749978 Free PMC article.

10

Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sorting.

Yu Y, Than C, Degnan JH, Nakhleh L. Yu Y, et al. Among authors: nakhleh l. Syst Biol. 2011 Mar;60(2):138-49. doi: 10.1093/sysbio/syq084. Epub 2011 Jan 19. Syst Biol. 2011. PMID: 21248369 Free PMC article.

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