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Automated mapping of large-scale chromatin structure in ENCODE.
Lian H, Thompson WA, Thurman R, Stamatoyannopoulos JA, Noble WS, Lawrence CE. Lian H, et al. Among authors: stamatoyannopoulos ja. Bioinformatics. 2008 Sep 1;24(17):1911-6. doi: 10.1093/bioinformatics/btn335. Epub 2008 Jun 30. Bioinformatics. 2008. PMID: 18591192 Free PMC article.
Unsupervised segmentation of continuous genomic data.
Day N, Hemmaplardh A, Thurman RE, Stamatoyannopoulos JA, Noble WS. Day N, et al. Among authors: stamatoyannopoulos ja. Bioinformatics. 2007 Jun 1;23(11):1424-6. doi: 10.1093/bioinformatics/btm096. Epub 2007 Mar 23. Bioinformatics. 2007. PMID: 17384021
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA. Sabo PJ, et al. Among authors: stamatoyannopoulos ja. Nat Methods. 2006 Jul;3(7):511-8. doi: 10.1038/nmeth890. Nat Methods. 2006. PMID: 16791208
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting.
Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, Reynolds AP, Thurman RE, Neph S, Kuehn MS, Noble WS, Fields S, Stamatoyannopoulos JA. Hesselberth JR, et al. Among authors: stamatoyannopoulos ja. Nat Methods. 2009 Apr;6(4):283-9. doi: 10.1038/nmeth.1313. Epub 2009 Mar 22. Nat Methods. 2009. PMID: 19305407 Free PMC article.
Multi-scale correlations in continuous genomic data.
Thurman RE, Noble WS, Stamatoyannopoulos JA. Thurman RE, et al. Among authors: stamatoyannopoulos ja. Pac Symp Biocomput. 2008:201-15. doi: 10.1142/9789812776136_0021. Pac Symp Biocomput. 2008. PMID: 18229687 Free article.
Predicting human nucleosome occupancy from primary sequence.
Gupta S, Dennis J, Thurman RE, Kingston R, Stamatoyannopoulos JA, Noble WS. Gupta S, et al. Among authors: stamatoyannopoulos ja. PLoS Comput Biol. 2008 Aug 22;4(8):e1000134. doi: 10.1371/journal.pcbi.1000134. PLoS Comput Biol. 2008. PMID: 18725940 Free PMC article.
Genome-scale mapping of DNase I hypersensitivity.
John S, Sabo PJ, Canfield TK, Lee K, Vong S, Weaver M, Wang H, Vierstra J, Reynolds AP, Thurman RE, Stamatoyannopoulos JA. John S, et al. Among authors: stamatoyannopoulos ja. Curr Protoc Mol Biol. 2013 Jul;Chapter 27:Unit 21.27. doi: 10.1002/0471142727.mb2127s103. Curr Protoc Mol Biol. 2013. PMID: 23821440 Free PMC article.
178 results