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The PSI-MOD community standard for representation of protein modification data.
Montecchi-Palazzi L, Beavis R, Binz PA, Chalkley RJ, Cottrell J, Creasy D, Shofstahl J, Seymour SL, Garavelli JS. Montecchi-Palazzi L, et al. Among authors: beavis r. Nat Biotechnol. 2008 Aug;26(8):864-6. doi: 10.1038/nbt0808-864. Nat Biotechnol. 2008. PMID: 18688235 No abstract available.
Recommendations from the 2008 International Summit on Proteomics Data Release and Sharing Policy: the Amsterdam principles.
Rodriguez H, Snyder M, Uhlén M, Andrews P, Beavis R, Borchers C, Chalkley RJ, Cho SY, Cottingham K, Dunn M, Dylag T, Edgar R, Hare P, Heck AJ, Hirsch RF, Kennedy K, Kolar P, Kraus HJ, Mallick P, Nesvizhskii A, Ping P, Pontén F, Yang L, Yates JR, Stein SE, Hermjakob H, Kinsinger CR, Apweiler R. Rodriguez H, et al. Among authors: beavis r. J Proteome Res. 2009 Jul;8(7):3689-92. doi: 10.1021/pr900023z. J Proteome Res. 2009. PMID: 19344107 Free PMC article.
Discovering and linking public omics data sets using the Omics Discovery Index.
Perez-Riverol Y, Bai M, da Veiga Leprevost F, Squizzato S, Park YM, Haug K, Carroll AJ, Spalding D, Paschall J, Wang M, Del-Toro N, Ternent T, Zhang P, Buso N, Bandeira N, Deutsch EW, Campbell DS, Beavis RC, Salek RM, Sarkans U, Petryszak R, Keays M, Fahy E, Sud M, Subramaniam S, Barbera A, Jiménez RC, Nesvizhskii AI, Sansone SA, Steinbeck C, Lopez R, Vizcaíno JA, Ping P, Hermjakob H. Perez-Riverol Y, et al. Among authors: beavis rc. Nat Biotechnol. 2017 May 9;35(5):406-409. doi: 10.1038/nbt.3790. Nat Biotechnol. 2017. PMID: 28486464 Free PMC article. No abstract available.
Informatics and data management in proteomics.
Fenyö D, Beavis RC. Fenyö D, et al. Trends Biotechnol. 2002 Dec;20(12 Suppl):S35-8. doi: 10.1016/s1471-1931(02)00198-2. Trends Biotechnol. 2002. PMID: 12570158 Review.
A chromosome-centric human proteome project (C-HPP) to characterize the sets of proteins encoded in chromosome 17.
Liu S, Im H, Bairoch A, Cristofanilli M, Chen R, Deutsch EW, Dalton S, Fenyo D, Fanayan S, Gates C, Gaudet P, Hincapie M, Hanash S, Kim H, Jeong SK, Lundberg E, Mias G, Menon R, Mu Z, Nice E, Paik YK, Uhlen M, Wells L, Wu SL, Yan F, Zhang F, Zhang Y, Snyder M, Omenn GS, Beavis RC, Hancock WS. Liu S, et al. Among authors: beavis rc. J Proteome Res. 2013 Jan 4;12(1):45-57. doi: 10.1021/pr300985j. Epub 2012 Dec 21. J Proteome Res. 2013. PMID: 23259914 Free PMC article.
Integrated Proteomic and Genomic Analysis of Gastric Cancer Patient Tissues.
Yan JF, Kim H, Jeong SK, Lee HJ, Sethi MK, Lee LY, Beavis RC, Im H, Snyder MP, Hofree M, Ideker T, Wu SL, Paik YK, Fanayan S, Hancock WS. Yan JF, et al. Among authors: beavis rc. J Proteome Res. 2015 Dec 4;14(12):4995-5006. doi: 10.1021/acs.jproteome.5b00827. Epub 2015 Oct 20. J Proteome Res. 2015. PMID: 26435392 Free PMC article.
105 results