Houseman EA - Search Results

1

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions.

Houseman EA, Christensen BC, Yeh RF, Marsit CJ, Karagas MR, Wrensch M, Nelson HH, Wiemels J, Zheng S, Wiencke JK, Kelsey KT. Houseman EA, et al. BMC Bioinformatics. 2008 Sep 9;9:365. doi: 10.1186/1471-2105-9-365. BMC Bioinformatics. 2008. PMID: 18782434 Free PMC article.

2

DNA methylation arrays as surrogate measures of cell mixture distribution.

Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, Wiencke JK, Kelsey KT. Houseman EA, et al. BMC Bioinformatics. 2012 May 8;13:86. doi: 10.1186/1471-2105-13-86. BMC Bioinformatics. 2012. PMID: 22568884 Free PMC article.

3

Reference-free cell mixture adjustments in analysis of DNA methylation data.

Houseman EA, Molitor J, Marsit CJ. Houseman EA, et al. Bioinformatics. 2014 May 15;30(10):1431-9. doi: 10.1093/bioinformatics/btu029. Epub 2014 Jan 21. Bioinformatics. 2014. PMID: 24451622 Free PMC article.

4

Copy number variation has little impact on bead-array-based measures of DNA methylation.

Houseman EA, Christensen BC, Karagas MR, Wrensch MR, Nelson HH, Wiemels JL, Zheng S, Wiencke JK, Kelsey KT, Marsit CJ. Houseman EA, et al. Bioinformatics. 2009 Aug 15;25(16):1999-2005. doi: 10.1093/bioinformatics/btp364. Epub 2009 Jun 19. Bioinformatics. 2009. PMID: 19542153 Free PMC article.

5

Semi-supervised recursively partitioned mixture models for identifying cancer subtypes.

Koestler DC, Marsit CJ, Christensen BC, Karagas MR, Bueno R, Sugarbaker DJ, Kelsey KT, Houseman EA. Koestler DC, et al. Among authors: houseman ea. Bioinformatics. 2010 Oct 15;26(20):2578-85. doi: 10.1093/bioinformatics/btq470. Epub 2010 Aug 16. Bioinformatics. 2010. PMID: 20834038 Free PMC article.

6

Cell-composition effects in the analysis of DNA methylation array data: a mathematical perspective.

Houseman EA, Kelsey KT, Wiencke JK, Marsit CJ. Houseman EA, et al. BMC Bioinformatics. 2015 Mar 21;16:95. doi: 10.1186/s12859-015-0527-y. BMC Bioinformatics. 2015. PMID: 25887114 Free PMC article.

7

Reference-free deconvolution of DNA methylation data and mediation by cell composition effects.

Houseman EA, Kile ML, Christiani DC, Ince TA, Kelsey KT, Marsit CJ. Houseman EA, et al. BMC Bioinformatics. 2016 Jun 29;17:259. doi: 10.1186/s12859-016-1140-4. BMC Bioinformatics. 2016. PMID: 27358049 Free PMC article.

8

Asbestos exposure predicts cell cycle control gene promoter methylation in pleural mesothelioma.

Christensen BC, Godleski JJ, Marsit CJ, Houseman EA, Lopez-Fagundo CY, Longacker JL, Bueno R, Sugarbaker DJ, Nelson HH, Kelsey KT. Christensen BC, et al. Among authors: houseman ea. Carcinogenesis. 2008 Aug;29(8):1555-9. doi: 10.1093/carcin/bgn059. Epub 2008 Feb 28. Carcinogenesis. 2008. PMID: 18310086 Free PMC article.

9

Review of processing and analysis methods for DNA methylation array data.

Wilhelm-Benartzi CS, Koestler DC, Karagas MR, Flanagan JM, Christensen BC, Kelsey KT, Marsit CJ, Houseman EA, Brown R. Wilhelm-Benartzi CS, et al. Among authors: houseman ea. Br J Cancer. 2013 Sep 17;109(6):1394-402. doi: 10.1038/bjc.2013.496. Epub 2013 Aug 27. Br J Cancer. 2013. PMID: 23982603 Free PMC article. Review.

10

Penalized item response theory models: application to epigenetic alterations in bladder cancer.

Houseman EA, Marsit C, Karagas M, Ryan LM. Houseman EA, et al. Biometrics. 2007 Dec;63(4):1269-77. doi: 10.1111/j.1541-0420.2007.00806.x. Epub 2007 May 2. Biometrics. 2007. PMID: 17484774

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