Park PJ - Search Results

1

Design and analysis of ChIP-seq experiments for DNA-binding proteins.

Kharchenko PV, Tolstorukov MY, Park PJ. Kharchenko PV, et al. Among authors: park pj. Nat Biotechnol. 2008 Dec;26(12):1351-9. doi: 10.1038/nbt.1508. Epub 2008 Nov 16. Nat Biotechnol. 2008. PMID: 19029915 Free PMC article.

2

Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference.

Park PJ, Cao YA, Lee SY, Kim JW, Chang MS, Hart R, Choi S. Park PJ, et al. J Biotechnol. 2004 Sep 9;112(3):225-45. doi: 10.1016/j.jbiotec.2004.05.006. J Biotechnol. 2004. PMID: 15313001

3

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK. Kuo WP, et al. Nat Biotechnol. 2006 Jul;24(7):832-40. doi: 10.1038/nbt1217. Epub 2006 Jul 2. Nat Biotechnol. 2006. PMID: 16823376

4

Normalization and experimental design for ChIP-chip data.

Peng S, Alekseyenko AA, Larschan E, Kuroda MI, Park PJ. Peng S, et al. Among authors: park pj. BMC Bioinformatics. 2007 Jun 25;8:219. doi: 10.1186/1471-2105-8-219. BMC Bioinformatics. 2007. PMID: 17592629 Free PMC article.

5

nuScore: a web-interface for nucleosome positioning predictions.

Tolstorukov MY, Choudhary V, Olson WK, Zhurkin VB, Park PJ. Tolstorukov MY, et al. Among authors: park pj. Bioinformatics. 2008 Jun 15;24(12):1456-8. doi: 10.1093/bioinformatics/btn212. Epub 2008 Apr 29. Bioinformatics. 2008. PMID: 18445607 Free PMC article.

6

Differential H3K4 methylation identifies developmentally poised hematopoietic genes.

Orford K, Kharchenko P, Lai W, Dao MC, Worhunsky DJ, Ferro A, Janzen V, Park PJ, Scadden DT. Orford K, et al. Among authors: park pj. Dev Cell. 2008 May;14(5):798-809. doi: 10.1016/j.devcel.2008.04.002. Dev Cell. 2008. PMID: 18477461 Free PMC article.

7

Nucleosome positioning in human HOX gene clusters.

Kharchenko PV, Woo CJ, Tolstorukov MY, Kingston RE, Park PJ. Kharchenko PV, et al. Among authors: park pj. Genome Res. 2008 Oct;18(10):1554-61. doi: 10.1101/gr.075952.107. Epub 2008 Aug 22. Genome Res. 2008. PMID: 18723689 Free PMC article.

8

A sequence motif within chromatin entry sites directs MSL establishment on the Drosophila X chromosome.

Alekseyenko AA, Peng S, Larschan E, Gorchakov AA, Lee OK, Kharchenko P, McGrath SD, Wang CI, Mardis ER, Park PJ, Kuroda MI. Alekseyenko AA, et al. Among authors: park pj. Cell. 2008 Aug 22;134(4):599-609. doi: 10.1016/j.cell.2008.06.033. Cell. 2008. PMID: 18724933 Free PMC article.

9

Epigenetics meets next-generation sequencing.

Park PJ. Park PJ. Epigenetics. 2008 Nov;3(6):318-21. doi: 10.4161/epi.3.6.7249. Epub 2008 Nov 22. Epigenetics. 2008. PMID: 19098449 Free article.

10

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes.

Tolstorukov MY, Kharchenko PV, Goldman JA, Kingston RE, Park PJ. Tolstorukov MY, et al. Among authors: park pj. Genome Res. 2009 Jun;19(6):967-77. doi: 10.1101/gr.084830.108. Epub 2009 Feb 26. Genome Res. 2009. PMID: 19246569 Free PMC article.

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