Krivov S - Search Results

1

Free-energy landscapes of proteins in the presence and absence of force.

Yew ZT, Krivov S, Paci E. Yew ZT, et al. Among authors: krivov s. J Phys Chem B. 2008 Dec 25;112(51):16902-7. doi: 10.1021/jp807316e. J Phys Chem B. 2008. PMID: 19053698

2

Modulation of a protein free-energy landscape by circular permutation.

Radou G, Enciso M, Krivov S, Paci E. Radou G, et al. Among authors: krivov s. J Phys Chem B. 2013 Nov 7;117(44):13743-7. doi: 10.1021/jp406818t. Epub 2013 Oct 23. J Phys Chem B. 2013. PMID: 24090448 Free PMC article.

3

Analysis of the free-energy surface of proteins from reversible folding simulations.

Allen LR, Krivov SV, Paci E. Allen LR, et al. PLoS Comput Biol. 2009 Jul;5(7):e1000428. doi: 10.1371/journal.pcbi.1000428. Epub 2009 Jul 10. PLoS Comput Biol. 2009. PMID: 19593364 Free PMC article.

4

Fluctuation power spectra reveal dynamical heterogeneity of peptides.

Khatri B, Yew ZT, Krivov S, McLeish T, Paci E. Khatri B, et al. Among authors: krivov s. J Chem Phys. 2010 Jul 7;133(1):015101. doi: 10.1063/1.3456552. J Chem Phys. 2010. PMID: 20614985 Free article.

5

The free energy landscape analysis of protein (FIP35) folding dynamics.

Krivov SV. Krivov SV. J Phys Chem B. 2011 Oct 27;115(42):12315-24. doi: 10.1021/jp208585r. Epub 2011 Oct 3. J Phys Chem B. 2011. PMID: 21902225

6

Optimal reaction coordinate as a biomarker for the dynamics of recovery from kidney transplant.

Krivov SV, Fenton H, Goldsmith PJ, Prasad RK, Fisher J, Paci E. Krivov SV, et al. PLoS Comput Biol. 2014 Jun 26;10(6):e1003685. doi: 10.1371/journal.pcbi.1003685. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24967678 Free PMC article.

7

Numerical construction of the p(fold) (committor) reaction coordinate for a Markov process.

Krivov SV. Krivov SV. J Phys Chem B. 2011 Oct 6;115(39):11382-8. doi: 10.1021/jp205231b. Epub 2011 Sep 9. J Phys Chem B. 2011. PMID: 21861509

8

One-dimensional barrier-preserving free-energy projections of a beta-sheet miniprotein: new insights into the folding process.

Krivov SV, Muff S, Caflisch A, Karplus M. Krivov SV, et al. J Phys Chem B. 2008 Jul 24;112(29):8701-14. doi: 10.1021/jp711864r. Epub 2008 Jul 1. J Phys Chem B. 2008. PMID: 18590307 Free PMC article.

9

Calculation of free-energy differences by confinement simulations. Application to peptide conformers.

Cecchini M, Krivov SV, Spichty M, Karplus M. Cecchini M, et al. Among authors: krivov sv. J Phys Chem B. 2009 Jul 23;113(29):9728-40. doi: 10.1021/jp9020646. J Phys Chem B. 2009. PMID: 19552392 Free PMC article.

10

One-dimensional free-energy profiles of complex systems: progress variables that preserve the barriers.

Krivov SV, Karplus M. Krivov SV, et al. J Phys Chem B. 2006 Jun 29;110(25):12689-98. doi: 10.1021/jp060039b. J Phys Chem B. 2006. PMID: 16800603

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