Paci E - Search Results

1

Free-energy landscapes of proteins in the presence and absence of force.

Yew ZT, Krivov S, Paci E. Yew ZT, et al. Among authors: paci e. J Phys Chem B. 2008 Dec 25;112(51):16902-7. doi: 10.1021/jp807316e. J Phys Chem B. 2008. PMID: 19053698

2

Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Brockwell DJ, Paci E, Zinober RC, Beddard GS, Olmsted PD, Smith DA, Perham RN, Radford SE. Brockwell DJ, et al. Among authors: paci e. Nat Struct Biol. 2003 Sep;10(9):731-7. doi: 10.1038/nsb968. Epub 2003 Aug 17. Nat Struct Biol. 2003. PMID: 12923573

3

Mechanically unfolding the small, topologically simple protein L.

Brockwell DJ, Beddard GS, Paci E, West DK, Olmsted PD, Smith DA, Radford SE. Brockwell DJ, et al. Among authors: paci e. Biophys J. 2005 Jul;89(1):506-19. doi: 10.1529/biophysj.105.061465. Epub 2005 Apr 29. Biophys J. 2005. PMID: 15863479 Free PMC article.

4

Mechanical resistance of proteins explained using simple molecular models.

West DK, Brockwell DJ, Olmsted PD, Radford SE, Paci E. West DK, et al. Among authors: paci e. Biophys J. 2006 Jan 1;90(1):287-97. doi: 10.1529/biophysj.105.071035. Epub 2005 Oct 7. Biophys J. 2006. PMID: 16214858 Free PMC article.

5

Free energy for protein folding from nonequilibrium simulations using the Jarzynski equality.

West DK, Olmsted PD, Paci E. West DK, et al. Among authors: paci e. J Chem Phys. 2006 Nov 28;125(20):204910. doi: 10.1063/1.2393232. J Chem Phys. 2006. PMID: 17144743

6

Internal protein dynamics shifts the distance to the mechanical transition state.

West DK, Paci E, Olmsted PD. West DK, et al. Among authors: paci e. Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Dec;74(6 Pt 1):061912. doi: 10.1103/PhysRevE.74.061912. Epub 2006 Dec 29. Phys Rev E Stat Nonlin Soft Matter Phys. 2006. PMID: 17280101 Free article.

7

Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules.

Best RB, Paci E, Hummer G, Dudko OK. Best RB, et al. Among authors: paci e. J Phys Chem B. 2008 May 15;112(19):5968-76. doi: 10.1021/jp075955j. Epub 2008 Feb 6. J Phys Chem B. 2008. PMID: 18251532

8

The structure of a folding intermediate provides insight into differences in immunoglobulin amyloidogenicity.

Feige MJ, Groscurth S, Marcinowski M, Yew ZT, Truffault V, Paci E, Kessler H, Buchner J. Feige MJ, et al. Among authors: paci e. Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13373-8. doi: 10.1073/pnas.0802809105. Epub 2008 Sep 3. Proc Natl Acad Sci U S A. 2008. PMID: 18768806 Free PMC article.

9

New dynamical window onto the landscape for forced protein unfolding.

Yew ZT, McLeish T, Paci E. Yew ZT, et al. Among authors: paci e. Phys Rev Lett. 2008 Dec 12;101(24):248104. doi: 10.1103/PhysRevLett.101.248104. Epub 2008 Dec 12. Phys Rev Lett. 2008. PMID: 19113675

10

Analysis of the free-energy surface of proteins from reversible folding simulations.

Allen LR, Krivov SV, Paci E. Allen LR, et al. Among authors: paci e. PLoS Comput Biol. 2009 Jul;5(7):e1000428. doi: 10.1371/journal.pcbi.1000428. Epub 2009 Jul 10. PLoS Comput Biol. 2009. PMID: 19593364 Free PMC article.

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