Seoighe C - Search Results

1

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences.

Ngandu NK, Scheffler K, Moore P, Woodman Z, Martin D, Seoighe C. Ngandu NK, et al. Among authors: seoighe c. Virol J. 2008 Dec 23;5:160. doi: 10.1186/1743-422X-5-160. Virol J. 2008. PMID: 19105834 Free PMC article. Review.

2

A Bayesian model comparison approach to inferring positive selection.

Scheffler K, Seoighe C. Scheffler K, et al. Among authors: seoighe c. Mol Biol Evol. 2005 Dec;22(12):2531-40. doi: 10.1093/molbev/msi250. Epub 2005 Aug 24. Mol Biol Evol. 2005. PMID: 16120799

3

Frequent toggling between alternative amino acids is driven by selection in HIV-1.

Delport W, Scheffler K, Seoighe C. Delport W, et al. Among authors: seoighe c. PLoS Pathog. 2008 Dec;4(12):e1000242. doi: 10.1371/journal.ppat.1000242. Epub 2008 Dec 19. PLoS Pathog. 2008. PMID: 19096508 Free PMC article.

4

Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmission.

Ngandu NK, Seoighe C, Scheffler K. Ngandu NK, et al. Among authors: seoighe c. Virol J. 2009 Oct 10;6:164. doi: 10.1186/1743-422X-6-164. Virol J. 2009. PMID: 19818146 Free PMC article.

5

Robust inference of positive selection from recombining coding sequences.

Scheffler K, Martin DP, Seoighe C. Scheffler K, et al. Among authors: seoighe c. Bioinformatics. 2006 Oct 15;22(20):2493-9. doi: 10.1093/bioinformatics/btl427. Epub 2006 Aug 7. Bioinformatics. 2006. PMID: 16895925

6

Adaptive changes in HIV-1 subtype C proteins during early infection are driven by changes in HLA-associated immune pressure.

Treurnicht FK, Seoighe C, Martin DP, Wood N, Abrahams MR, Rosa Dde A, Bredell H, Woodman Z, Hide W, Mlisana K, Karim SA, Gray CM, Williamson C. Treurnicht FK, et al. Among authors: seoighe c. Virology. 2010 Jan 20;396(2):213-25. doi: 10.1016/j.virol.2009.10.002. Epub 2009 Nov 13. Virology. 2010. PMID: 19913270 Free PMC article.

7

Maximum likelihood inference of imprinting and allele-specific expression from EST data.

Seoighe C, Nembaware V, Scheffler K. Seoighe C, et al. Bioinformatics. 2006 Dec 15;22(24):3032-9. doi: 10.1093/bioinformatics/btl521. Epub 2006 Oct 11. Bioinformatics. 2006. PMID: 17038342

8

A model of directional selection applied to the evolution of drug resistance in HIV-1.

Seoighe C, Ketwaroo F, Pillay V, Scheffler K, Wood N, Duffet R, Zvelebil M, Martinson N, McIntyre J, Morris L, Hide W. Seoighe C, et al. Mol Biol Evol. 2007 Apr;24(4):1025-31. doi: 10.1093/molbev/msm021. Epub 2007 Feb 1. Mol Biol Evol. 2007. PMID: 17272680

9

Human immunodeficiency virus-specific gamma interferon enzyme-linked immunospot assay responses targeting specific regions of the proteome during primary subtype C infection are poor predictors of the course of viremia and set point.

Gray CM, Mlotshwa M, Riou C, Mathebula T, de Assis Rosa D, Mashishi T, Seoighe C, Ngandu N, van Loggerenberg F, Morris L, Mlisana K, Williamson C, Karim SA; CAPRISA 002 Acute Infection Study Team. Gray CM, et al. Among authors: seoighe c. J Virol. 2009 Jan;83(1):470-8. doi: 10.1128/JVI.01678-08. Epub 2008 Oct 22. J Virol. 2009. PMID: 18945774 Free PMC article.

10

Models of coding sequence evolution.

Delport W, Scheffler K, Seoighe C. Delport W, et al. Among authors: seoighe c. Brief Bioinform. 2009 Jan;10(1):97-109. doi: 10.1093/bib/bbn049. Epub 2008 Oct 29. Brief Bioinform. 2009. PMID: 18971241 Free PMC article. Review.

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