Bonvin AM - Search Results

1

Data-driven homology modelling of P-glycoprotein in the ATP-bound state indicates flexibility of the transmembrane domains.

Stockner T, de Vries SJ, Bonvin AM, Ecker GF, Chiba P. Stockner T, et al. Among authors: bonvin am. FEBS J. 2009 Feb;276(4):964-72. doi: 10.1111/j.1742-4658.2008.06832.x. FEBS J. 2009. PMID: 19215299 Free PMC article.

2

Molecular dynamics studies of a molecular switch in the glucocorticoid receptor.

Stockner T, Sterk H, Kaptein R, Bonvin AM. Stockner T, et al. Among authors: bonvin am. J Mol Biol. 2003 Apr 25;328(2):325-34. doi: 10.1016/s0022-2836(03)00316-4. J Mol Biol. 2003. PMID: 12691744

3

Data-driven docking for the study of biomolecular complexes.

van Dijk AD, Boelens R, Bonvin AM. van Dijk AD, et al. Among authors: bonvin am. FEBS J. 2005 Jan;272(2):293-312. doi: 10.1111/j.1742-4658.2004.04473.x. FEBS J. 2005. PMID: 15654870 Free article. Review.

4

Data-driven docking: HADDOCK's adventures in CAPRI.

van Dijk AD, de Vries SJ, Dominguez C, Chen H, Zhou HX, Bonvin AM. van Dijk AD, et al. Among authors: bonvin am. Proteins. 2005 Aug 1;60(2):232-8. doi: 10.1002/prot.20563. Proteins. 2005. PMID: 15981252

5

WHISCY: what information does surface conservation yield? Application to data-driven docking.

de Vries SJ, van Dijk AD, Bonvin AM. de Vries SJ, et al. Among authors: bonvin am. Proteins. 2006 May 15;63(3):479-89. doi: 10.1002/prot.20842. Proteins. 2006. PMID: 16450362

6

Intramolecular surface contacts contain information about protein-protein interface regions.

de Vries SJ, Bonvin AM. de Vries SJ, et al. Among authors: bonvin am. Bioinformatics. 2006 Sep 1;22(17):2094-8. doi: 10.1093/bioinformatics/btl275. Epub 2006 Jun 9. Bioinformatics. 2006. PMID: 16766554

7

HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets.

de Vries SJ, van Dijk AD, Krzeminski M, van Dijk M, Thureau A, Hsu V, Wassenaar T, Bonvin AM. de Vries SJ, et al. Among authors: bonvin am. Proteins. 2007 Dec 1;69(4):726-33. doi: 10.1002/prot.21723. Proteins. 2007. PMID: 17803234

8

How proteins get in touch: interface prediction in the study of biomolecular complexes.

de Vries SJ, Bonvin AM. de Vries SJ, et al. Among authors: bonvin am. Curr Protein Pept Sci. 2008 Aug;9(4):394-406. doi: 10.2174/138920308785132712. Curr Protein Pept Sci. 2008. PMID: 18691126

9

A comprehensive framework of E2-RING E3 interactions of the human ubiquitin-proteasome system.

van Wijk SJ, de Vries SJ, Kemmeren P, Huang A, Boelens R, Bonvin AM, Timmers HT. van Wijk SJ, et al. Among authors: bonvin am. Mol Syst Biol. 2009;5:295. doi: 10.1038/msb.2009.55. Epub 2009 Aug 18. Mol Syst Biol. 2009. PMID: 19690564 Free PMC article.

10

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server.

Karaca E, Melquiond AS, de Vries SJ, Kastritis PL, Bonvin AM. Karaca E, et al. Among authors: bonvin am. Mol Cell Proteomics. 2010 Aug;9(8):1784-94. doi: 10.1074/mcp.M000051-MCP201. Epub 2010 Mar 19. Mol Cell Proteomics. 2010. PMID: 20305088 Free PMC article.

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