Valouev A - Search Results

1

Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver.

Brunner AL, Johnson DS, Kim SW, Valouev A, Reddy TE, Neff NF, Anton E, Medina C, Nguyen L, Chiao E, Oyolu CB, Schroth GP, Absher DM, Baker JC, Myers RM. Brunner AL, et al. Among authors: valouev a. Genome Res. 2009 Jun;19(6):1044-56. doi: 10.1101/gr.088773.108. Epub 2009 Mar 9. Genome Res. 2009. PMID: 19273619 Free PMC article.

2

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.

Valouev A, Johnson DS, Sundquist A, Medina C, Anton E, Batzoglou S, Myers RM, Sidow A. Valouev A, et al. Nat Methods. 2008 Sep;5(9):829-34. doi: 10.1038/nmeth.1246. Nat Methods. 2008. PMID: 19160518 Free PMC article.

3

Copy number variation is a fundamental aspect of the placental genome.

Hannibal RL, Chuong EB, Rivera-Mulia JC, Gilbert DM, Valouev A, Baker JC. Hannibal RL, et al. Among authors: valouev a. PLoS Genet. 2014 May 1;10(5):e1004290. doi: 10.1371/journal.pgen.1004290. eCollection 2014 May. PLoS Genet. 2014. PMID: 24785991 Free PMC article.

4

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning.

Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM. Valouev A, et al. Genome Res. 2008 Jul;18(7):1051-63. doi: 10.1101/gr.076463.108. Epub 2008 May 13. Genome Res. 2008. PMID: 18477713 Free PMC article.

5

Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates.

Ma Z, Swigut T, Valouev A, Rada-Iglesias A, Wysocka J. Ma Z, et al. Among authors: valouev a. Nat Struct Mol Biol. 2011 Feb;18(2):120-7. doi: 10.1038/nsmb.2000. Epub 2010 Dec 23. Nat Struct Mol Biol. 2011. PMID: 21183938

6

Reconstructing genetic history of Siberian and Northeastern European populations.

Wong EH, Khrunin A, Nichols L, Pushkarev D, Khokhrin D, Verbenko D, Evgrafov O, Knowles J, Novembre J, Limborska S, Valouev A. Wong EH, et al. Among authors: valouev a. Genome Res. 2017 Jan;27(1):1-14. doi: 10.1101/gr.202945.115. Epub 2016 Dec 13. Genome Res. 2017. PMID: 27965293 Free PMC article.

7

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Valouev A, et al. Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002. Nature. 2011. PMID: 21602827 Free PMC article.

8

Discovery of recurrent structural variants in nasopharyngeal carcinoma.

Valouev A, Weng Z, Sweeney RT, Varma S, Le QT, Kong C, Sidow A, West RB. Valouev A, et al. Genome Res. 2014 Feb;24(2):300-9. doi: 10.1101/gr.156224.113. Epub 2013 Nov 8. Genome Res. 2014. PMID: 24214394 Free PMC article.

9

Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Peng JC, Valouev A, Swigut T, Zhang J, Zhao Y, Sidow A, Wysocka J. Peng JC, et al. Among authors: valouev a. Cell. 2009 Dec 24;139(7):1290-302. doi: 10.1016/j.cell.2009.12.002. Cell. 2009. PMID: 20064375 Free PMC article.

10

Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA.

Liu MC, Oxnard GR, Klein EA, Swanton C, Seiden MV; CCGA Consortium. Liu MC, et al. Ann Oncol. 2020 Jun;31(6):745-759. doi: 10.1016/j.annonc.2020.02.011. Epub 2020 Mar 30. Ann Oncol. 2020. PMID: 33506766 Free PMC article.

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