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Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94.
Prudnikova T, Mozga T, Rezacova P, Chaloupkova R, Sato Y, Nagata Y, Brynda J, Kuty M, Damborsky J, Smatanova IK. Prudnikova T, et al. Among authors: chaloupkova r. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Apr 1;65(Pt 4):353-6. doi: 10.1107/S1744309109007039. Epub 2009 Mar 21. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009. PMID: 19342778 Free PMC article.
Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities.
Sato Y, Monincová M, Chaloupková R, Prokop Z, Ohtsubo Y, Minamisawa K, Tsuda M, Damborsky J, Nagata Y. Sato Y, et al. Among authors: chaloupkova r. Appl Environ Microbiol. 2005 Aug;71(8):4372-9. doi: 10.1128/AEM.71.8.4372-4379.2005. Appl Environ Microbiol. 2005. PMID: 16085827 Free PMC article.
Expression of glycosylated haloalkane dehalogenase LinB in Pichia pastoris.
Nakamura T, Zámocký M, Zdráhal Z, Chaloupková R, Monincová M, Prokop Z, Nagata Y, Damborský J. Nakamura T, et al. Among authors: chaloupkova r. Protein Expr Purif. 2006 Mar;46(1):85-91. doi: 10.1016/j.pep.2005.08.022. Epub 2005 Sep 22. Protein Expr Purif. 2006. PMID: 16216524
Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases.
Jesenská A, Pavlová M, Strouhal M, Chaloupková R, Tesínská I, Monincová M, Prokop Z, Bartos M, Pavlík I, Rychlík I, Möbius P, Nagata Y, Damborsky J. Jesenská A, et al. Among authors: chaloupkova r. Appl Environ Microbiol. 2005 Nov;71(11):6736-45. doi: 10.1128/AEM.71.11.6736-6745.2005. Appl Environ Microbiol. 2005. PMID: 16269704 Free PMC article.
Pathways and mechanisms for product release in the engineered haloalkane dehalogenases explored using classical and random acceleration molecular dynamics simulations.
Klvana M, Pavlova M, Koudelakova T, Chaloupkova R, Dvorak P, Prokop Z, Stsiapanava A, Kuty M, Kuta-Smatanova I, Dohnalek J, Kulhanek P, Wade RC, Damborsky J. Klvana M, et al. Among authors: chaloupkova r. J Mol Biol. 2009 Oct 9;392(5):1339-56. doi: 10.1016/j.jmb.2009.06.076. Epub 2009 Jul 3. J Mol Biol. 2009. PMID: 19577578
69 results