Käll L - Search Results

1

Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets.

Spivak M, Weston J, Bottou L, Käll L, Noble WS. Spivak M, et al. Among authors: kall l. J Proteome Res. 2009 Jul;8(7):3737-45. doi: 10.1021/pr801109k. J Proteome Res. 2009. PMID: 19385687 Free PMC article.

2

Spatial multimodal analysis of transcriptomes and metabolomes in tissues.

Vicari M, Mirzazadeh R, Nilsson A, Shariatgorji R, Bjärterot P, Larsson L, Lee H, Nilsson M, Foyer J, Ekvall M, Czarnewski P, Zhang X, Svenningsson P, Käll L, Andrén PE, Lundeberg J. Vicari M, et al. Among authors: kall l. Nat Biotechnol. 2024 Jul;42(7):1046-1050. doi: 10.1038/s41587-023-01937-y. Epub 2023 Sep 4. Nat Biotechnol. 2024. PMID: 37667091 Free PMC article.

3

Integrating Identification and Quantification Uncertainty for Differential Protein Abundance Analysis with Triqler.

The M, Käll L. The M, et al. Among authors: kall l. Methods Mol Biol. 2023;2426:91-117. doi: 10.1007/978-1-0716-1967-4_5. Methods Mol Biol. 2023. PMID: 36308686

4

Finding haplotypic signatures in proteins.

Vašíček J, Skiadopoulou D, Kuznetsova KG, Wen B, Johansson S, Njølstad PR, Bruckner S, Käll L, Vaudel M. Vašíček J, et al. Among authors: kall l. Gigascience. 2022 Dec 28;12:giad093. doi: 10.1093/gigascience/giad093. Epub 2023 Oct 31. Gigascience. 2022. PMID: 37919975 Free PMC article.

5

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

Käll L, Canterbury JD, Weston J, Noble WS, MacCoss MJ. Käll L, et al. Nat Methods. 2007 Nov;4(11):923-5. doi: 10.1038/nmeth1113. Epub 2007 Oct 21. Nat Methods. 2007. PMID: 17952086

6

Posterior error probabilities and false discovery rates: two sides of the same coin.

Käll L, Storey JD, MacCoss MJ, Noble WS. Käll L, et al. J Proteome Res. 2008 Jan;7(1):40-4. doi: 10.1021/pr700739d. Epub 2007 Dec 4. J Proteome Res. 2008. PMID: 18052118 Review.

7

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.

Käll L, Storey JD, MacCoss MJ, Noble WS. Käll L, et al. J Proteome Res. 2008 Jan;7(1):29-34. doi: 10.1021/pr700600n. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067246 Review.

8

Rapid and accurate peptide identification from tandem mass spectra.

Park CY, Klammer AA, Käll L, MacCoss MJ, Noble WS. Park CY, et al. Among authors: kall l. J Proteome Res. 2008 Jul;7(7):3022-7. doi: 10.1021/pr800127y. Epub 2008 May 28. J Proteome Res. 2008. PMID: 18505281 Free PMC article.

9

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations.

Merrihew GE, Davis C, Ewing B, Williams G, Käll L, Frewen BE, Noble WS, Green P, Thomas JH, MacCoss MJ. Merrihew GE, et al. Among authors: kall l. Genome Res. 2008 Oct;18(10):1660-9. doi: 10.1101/gr.077644.108. Epub 2008 Jul 24. Genome Res. 2008. PMID: 18653799 Free PMC article.

10

Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.

Käll L, Storey JD, Noble WS. Käll L, et al. Bioinformatics. 2008 Aug 15;24(16):i42-8. doi: 10.1093/bioinformatics/btn294. Bioinformatics. 2008. PMID: 18689838 Free PMC article.

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