Cai YD - Search Results

1

A knowledge-based method to predict the cooperative relationship between transcription factors.

Lu L, Qian Z, Shi X, Li H, Cai YD, Li Y. Lu L, et al. Among authors: cai yd. Mol Divers. 2010 Nov;14(4):815-9. doi: 10.1007/s11030-009-9177-1. Epub 2009 Jul 10. Mol Divers. 2010. PMID: 19590970

2

Support vector machine for predicting alpha-turn types.

Cai YD, Feng KY, Li YX, Chou KC. Cai YD, et al. Peptides. 2003 Apr;24(4):629-30. doi: 10.1016/s0196-9781(03)00100-1. Peptides. 2003. PMID: 12860209

3

Prediction of beta-turns with learning machines.

Cai YD, Liu XJ, Li YX, Xu XB, Chou KC. Cai YD, et al. Peptides. 2003 May;24(5):665-9. doi: 10.1016/s0196-9781(03)00133-5. Peptides. 2003. PMID: 12895651

4

Predicting enzyme subclass by functional domain composition and pseudo amino acid composition.

Cai YD, Chou KC. Cai YD, et al. J Proteome Res. 2005 May-Jun;4(3):967-71. doi: 10.1021/pr0500399. J Proteome Res. 2005. PMID: 15952744

5

Computational methods for protein-protein interaction and their application.

Shi TL, Li YX, Cai YD, Chou KC. Shi TL, et al. Among authors: cai yd. Curr Protein Pept Sci. 2005 Oct;6(5):443-9. doi: 10.2174/138920305774329313. Curr Protein Pept Sci. 2005. PMID: 16248796 Review.

6

Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines.

Yu X, Cao J, Cai Y, Shi T, Li Y. Yu X, et al. J Theor Biol. 2006 May 21;240(2):175-84. doi: 10.1016/j.jtbi.2005.09.018. Epub 2005 Nov 7. J Theor Biol. 2006. PMID: 16274699

7

Operon prediction based on SVM.

Zhang GQ, Cao ZW, Luo QM, Cai YD, Li YX. Zhang GQ, et al. Among authors: cai yd. Comput Biol Chem. 2006 Jun;30(3):233-40. doi: 10.1016/j.compbiolchem.2006.03.002. Epub 2006 May 23. Comput Biol Chem. 2006. PMID: 16716751

8

Demonstration of two novel methods for predicting functional siRNA efficiency.

Jia P, Shi T, Cai Y, Li Y. Jia P, et al. BMC Bioinformatics. 2006 May 29;7:271. doi: 10.1186/1471-2105-7-271. BMC Bioinformatics. 2006. PMID: 16729898 Free PMC article.

9

Predicting O-glycosylation sites in mammalian proteins by using SVMs.

Li S, Liu B, Zeng R, Cai Y, Li Y. Li S, et al. Comput Biol Chem. 2006 Jun;30(3):203-8. doi: 10.1016/j.compbiolchem.2006.02.002. Comput Biol Chem. 2006. PMID: 16731044

10

Automatic transcription factor classifier based on functional domain composition.

Qian Z, Cai YD, Li Y. Qian Z, et al. Among authors: cai yd. Biochem Biophys Res Commun. 2006 Aug 18;347(1):141-4. doi: 10.1016/j.bbrc.2006.06.060. Epub 2006 Jun 21. Biochem Biophys Res Commun. 2006. PMID: 16808896

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