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scROSHI: robust supervised hierarchical identification of single cells.
Prummer M, Bertolini A, Bosshard L, Barkmann F, Yates J, Boeva V; Tumor Profiler Consortium; Stekhoven D, Singer F. Prummer M, et al. NAR Genom Bioinform. 2023 Jun 16;5(2):lqad058. doi: 10.1093/nargab/lqad058. eCollection 2023 Jun. NAR Genom Bioinform. 2023. PMID: 37332656 Free PMC article.
Comparative transcriptomics coupled to developmental grading via transgenic zebrafish reporter strains identifies conserved features in neutrophil maturation.
Kirchberger S, Shoeb MR, Lazic D, Wenninger-Weinzierl A, Fischer K, Shaw LE, Nogueira F, Rifatbegovic F, Bozsaky E, Ladenstein R, Bodenmiller B, Lion T, Traver D, Farlik M, Schöfer C, Taschner-Mandl S, Halbritter F, Distel M. Kirchberger S, et al. Among authors: bodenmiller b. Nat Commun. 2024 Feb 27;15(1):1792. doi: 10.1038/s41467-024-45802-1. Nat Commun. 2024. PMID: 38413586 Free PMC article.
An end-to-end workflow for multiplexed image processing and analysis.
Windhager J, Zanotelli VRT, Schulz D, Meyer L, Daniel M, Bodenmiller B, Eling N. Windhager J, et al. Among authors: bodenmiller b. Nat Protoc. 2023 Nov;18(11):3565-3613. doi: 10.1038/s41596-023-00881-0. Epub 2023 Oct 10. Nat Protoc. 2023. PMID: 37816904 Review.
Multiplex protein imaging in tumour biology.
de Souza N, Zhao S, Bodenmiller B. de Souza N, et al. Among authors: bodenmiller b. Nat Rev Cancer. 2024 Mar;24(3):171-191. doi: 10.1038/s41568-023-00657-4. Epub 2024 Feb 5. Nat Rev Cancer. 2024. PMID: 38316945 Review.
127 results