Gürsoy G - Search Results

1

Mechanical signaling on the single protein level studied using steered molecular dynamics.

Genchev GZ, Källberg M, Gürsoy G, Mittal A, Dubey L, Perisic O, Feng G, Langlois R, Lu H. Genchev GZ, et al. Among authors: gursoy g. Cell Biochem Biophys. 2009;55(3):141-52. doi: 10.1007/s12013-009-9064-5. Epub 2009 Aug 11. Cell Biochem Biophys. 2009. PMID: 19669741 Review.

2

Privacy-preserving cancer type prediction with homomorphic encryption.

Sarkar E, Chielle E, Gursoy G, Chen L, Gerstein M, Maniatakos M. Sarkar E, et al. Among authors: gursoy g. Sci Rep. 2023 Jan 30;13(1):1661. doi: 10.1038/s41598-023-28481-8. Sci Rep. 2023. PMID: 36717667 Free PMC article.

3

Multiscale Modeling of Cellular Epigenetic States: Stochasticity in Molecular Networks, Chromatin Folding in Cell Nuclei, and Tissue Pattern Formation of Cells.

Liang J, Cao Y, Gursoy G, Naveed H, Terebus A, Zhao J. Liang J, et al. Among authors: gursoy g. Crit Rev Biomed Eng. 2015;43(4):323-46. doi: 10.1615/CritRevBiomedEng.2016016559. Crit Rev Biomed Eng. 2015. PMID: 27480462 Free PMC article.

4

Unique Toll-Like Receptor 4 Activation by NAMPT/PBEF Induces NFκB Signaling and Inflammatory Lung Injury.

Camp SM, Ceco E, Evenoski CL, Danilov SM, Zhou T, Chiang ET, Moreno-Vinasco L, Mapes B, Zhao J, Gursoy G, Brown ME, Adyshev DM, Siddiqui SS, Quijada H, Sammani S, Letsiou E, Saadat L, Yousef M, Wang T, Liang J, Garcia JG. Camp SM, et al. Among authors: gursoy g. Sci Rep. 2015 Aug 14;5:13135. doi: 10.1038/srep13135. Sci Rep. 2015. PMID: 26272519 Free PMC article.

5

Spatial confinement is a major determinant of the folding landscape of human chromosomes.

Gürsoy G, Xu Y, Kenter AL, Liang J. Gürsoy G, et al. Nucleic Acids Res. 2014 Jul;42(13):8223-30. doi: 10.1093/nar/gku462. Epub 2014 Jul 2. Nucleic Acids Res. 2014. PMID: 24990374 Free PMC article.

6

Computational predictions of structures of multichromosomes of budding yeast.

Gürsoy G, Xu Y, Liang J. Gürsoy G, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2014;2014:3945-8. doi: 10.1109/EMBC.2014.6944487. Annu Int Conf IEEE Eng Med Biol Soc. 2014. PMID: 25570855 Free PMC article.

7

Three-dimensional chromosome structures from energy landscape.

Gürsoy G, Liang J. Gürsoy G, et al. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):11991-11993. doi: 10.1073/pnas.1614535113. Epub 2016 Oct 6. Proc Natl Acad Sci U S A. 2016. PMID: 27790979 Free PMC article. No abstract available.

8

Mechanisms of stochastic focusing and defocusing in biological reaction networks: insight from accurate chemical master equation (ACME) solutions.

Gursoy G, Terebus A, Youfang Cao, Jie Liang. Gursoy G, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug;2016:1480-1483. doi: 10.1109/EMBC.2016.7590989. Annu Int Conf IEEE Eng Med Biol Soc. 2016. PMID: 28268606 Free PMC article.

9

Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.

Gürsoy G, Xu Y, Liang J. Gürsoy G, et al. PLoS Comput Biol. 2017 Jul 13;13(7):e1005658. doi: 10.1371/journal.pcbi.1005658. eCollection 2017 Jul. PLoS Comput Biol. 2017. PMID: 28704374 Free PMC article.

10

Computational construction of 3D chromatin ensembles and prediction of functional interactions of alpha-globin locus from 5C data.

Gürsoy G, Xu Y, Kenter AL, Liang J. Gürsoy G, et al. Nucleic Acids Res. 2017 Nov 16;45(20):11547-11558. doi: 10.1093/nar/gkx784. Nucleic Acids Res. 2017. PMID: 28981716 Free PMC article.

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