Whiteaker JR - Search Results

1

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses.

Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE. Rudnick PA, et al. Among authors: whiteaker jr. Mol Cell Proteomics. 2010 Feb;9(2):225-41. doi: 10.1074/mcp.M900223-MCP200. Epub 2009 Oct 16. Mol Cell Proteomics. 2010. PMID: 19837981 Free PMC article.

2

Signal maps for mass spectrometry-based comparative proteomics.

Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B. Prakash A, et al. Mol Cell Proteomics. 2006 Mar;5(3):423-32. doi: 10.1074/mcp.M500133-MCP200. Epub 2005 Nov 3. Mol Cell Proteomics. 2006. PMID: 16269421 Free article.

3

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

Bellew M, Coram M, Fitzgibbon M, Igra M, Randolph T, Wang P, May D, Eng J, Fang R, Lin C, Chen J, Goodlett D, Whiteaker J, Paulovich A, McIntosh M. Bellew M, et al. Bioinformatics. 2006 Aug 1;22(15):1902-9. doi: 10.1093/bioinformatics/btl276. Epub 2006 Jun 9. Bioinformatics. 2006. PMID: 16766559

4

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Piening BD, Wang P, Bangur CS, Whiteaker J, Zhang H, Feng LC, Keane JF, Eng JK, Tang H, Prakash A, McIntosh MW, Paulovich A. Piening BD, et al. J Proteome Res. 2006 Jul;5(7):1527-34. doi: 10.1021/pr050436j. J Proteome Res. 2006. PMID: 16823959

5

Normalization regarding non-random missing values in high-throughput mass spectrometry data.

Wang P, Tang H, Zhang H, Whiteaker J, Paulovich AG, Mcintosh M. Wang P, et al. Pac Symp Biocomput. 2006:315-26. Pac Symp Biocomput. 2006. PMID: 17094249 Free article.

6

Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers.

Whiteaker JR, Zhao L, Zhang HY, Feng LC, Piening BD, Anderson L, Paulovich AG. Whiteaker JR, et al. Anal Biochem. 2007 Mar 1;362(1):44-54. doi: 10.1016/j.ab.2006.12.023. Epub 2006 Dec 20. Anal Biochem. 2007. PMID: 17241609 Free PMC article.

7

A platform for accurate mass and time analyses of mass spectrometry data.

May D, Fitzgibbon M, Liu Y, Holzman T, Eng J, Kemp CJ, Whiteaker J, Paulovich A, McIntosh M. May D, et al. J Proteome Res. 2007 Jul;6(7):2685-94. doi: 10.1021/pr070146y. Epub 2007 Jun 9. J Proteome Res. 2007. PMID: 17559252

8

Assessing bias in experiment design for large scale mass spectrometry-based quantitative proteomics.

Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B. Prakash A, et al. Mol Cell Proteomics. 2007 Oct;6(10):1741-8. doi: 10.1074/mcp.M600470-MCP200. Epub 2007 Jul 7. Mol Cell Proteomics. 2007. PMID: 17617667 Free article.

9

Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.

Whiteaker JR, Zhang H, Zhao L, Wang P, Kelly-Spratt KS, Ivey RG, Piening BD, Feng LC, Kasarda E, Gurley KE, Eng JK, Chodosh LA, Kemp CJ, McIntosh MW, Paulovich AG. Whiteaker JR, et al. J Proteome Res. 2007 Oct;6(10):3962-75. doi: 10.1021/pr070202v. Epub 2007 Aug 21. J Proteome Res. 2007. PMID: 17711321

10

The evolving role of mass spectrometry in cancer biomarker discovery.

Wang P, Whiteaker JR, Paulovich AG. Wang P, et al. Among authors: whiteaker jr. Cancer Biol Ther. 2009 Jun;8(12):1083-94. doi: 10.4161/cbt.8.12.8634. Epub 2009 Jun 6. Cancer Biol Ther. 2009. PMID: 19502776 Free PMC article. Review.

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