Yokota A - Search Results

1

Contribution of asparagine residues to the stabilization of a proteinaceous antigen-antibody complex, HyHEL-10-hen egg white lysozyme.

Yokota A, Tsumoto K, Shiroishi M, Nakanishi T, Kondo H, Kumagai I. Yokota A, et al. J Biol Chem. 2010 Mar 5;285(10):7686-96. doi: 10.1074/jbc.M109.089623. Epub 2009 Dec 28. J Biol Chem. 2010. PMID: 20038580 Free PMC article.

2

Structural evidence for entropic contribution of salt bridge formation to a protein antigen-antibody interaction: the case of hen lysozyme-HyHEL-10 Fv complex.

Shiroishi M, Yokota A, Tsumoto K, Kondo H, Nishimiya Y, Horii K, Matsushima M, Ogasahara K, Yutani K, Kumagai I. Shiroishi M, et al. Among authors: yokota a. J Biol Chem. 2001 Jun 22;276(25):23042-50. doi: 10.1074/jbc.M100480200. Epub 2001 Apr 10. J Biol Chem. 2001. PMID: 11297547 Free article.

3

The role of hydrogen bonding via interfacial water molecules in antigen-antibody complexation. The HyHEL-10-HEL interaction.

Yokota A, Tsumoto K, Shiroishi M, Kondo H, Kumagai I. Yokota A, et al. J Biol Chem. 2003 Feb 14;278(7):5410-8. doi: 10.1074/jbc.M210182200. Epub 2002 Nov 19. J Biol Chem. 2003. PMID: 12444085 Free article.

4

Entropically driven MHC class I recognition by human inhibitory receptor leukocyte Ig-like receptor B1 (LILRB1/ILT2/CD85j).

Shiroishi M, Kuroki K, Tsumoto K, Yokota A, Sasaki T, Amano K, Shimojima T, Shirakihara Y, Rasubala L, van der Merwe PA, Kumagai I, Kohda D, Maenaka K. Shiroishi M, et al. Among authors: yokota a. J Mol Biol. 2006 Jan 13;355(2):237-48. doi: 10.1016/j.jmb.2005.10.057. Epub 2005 Nov 8. J Mol Biol. 2006. PMID: 16305801

5

Evolutional design of a hyperactive cysteine- and methionine-free mutant of Escherichia coli dihydrofolate reductase.

Iwakura M, Maki K, Takahashi H, Takenawa T, Yokota A, Katayanagi K, Kamiyama T, Gekko K. Iwakura M, et al. Among authors: yokota a. J Biol Chem. 2006 May 12;281(19):13234-13246. doi: 10.1074/jbc.M508823200. Epub 2006 Mar 1. J Biol Chem. 2006. PMID: 16510443 Free article.

6

Structural consequences of mutations in interfacial Tyr residues of a protein antigen-antibody complex. The case of HyHEL-10-HEL.

Shiroishi M, Tsumoto K, Tanaka Y, Yokota A, Nakanishi T, Kondo H, Kumagai I. Shiroishi M, et al. Among authors: yokota a. J Biol Chem. 2007 Mar 2;282(9):6783-91. doi: 10.1074/jbc.M605197200. Epub 2006 Dec 12. J Biol Chem. 2007. PMID: 17166830 Free article.

7

Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10.

Nakanishi T, Tsumoto K, Yokota A, Kondo H, Kumagai I. Nakanishi T, et al. Among authors: yokota a. Protein Sci. 2008 Feb;17(2):261-70. doi: 10.1110/ps.073156708. Protein Sci. 2008. PMID: 18227432 Free PMC article.

8

Critical contribution of aromatic rings to specific recognition of polyether rings. The case of ciguatoxin CTX3C-ABC and its specific antibody 1C49.

Tsumoto K, Yokota A, Tanaka Y, Ui M, Tsumuraya T, Fujii I, Kumagai I, Nagumo Y, Oguri H, Inoue M, Hirama M. Tsumoto K, et al. Among authors: yokota a. J Biol Chem. 2008 May 2;283(18):12259-66. doi: 10.1074/jbc.M710553200. Epub 2008 Mar 6. J Biol Chem. 2008. PMID: 18326040 Free article.

9

Immunoassay of the MRSA-related toxic protein, leukocidin, with scanning electrochemical microscopy.

Kasai S, Yokota A, Zhou H, Nishizawa M, Niwa K, Onouchi T, Matsue T. Kasai S, et al. Among authors: yokota a. Anal Chem. 2000 Dec 1;72(23):5761-5. doi: 10.1021/ac000895y. Anal Chem. 2000. PMID: 11128933

10

Arg-73 of the RNA endonuclease MazF in Salmonella enterica subsp. arizonae contributes to guanine and uracil recognition in the cleavage sequence.

Okabe T, Aoi R, Yokota A, Tamiya-Ishitsuka H, Jiang Y, Sasaki A, Tsuneda S, Noda N. Okabe T, et al. Among authors: yokota a. J Biol Chem. 2024 Feb;300(2):105636. doi: 10.1016/j.jbc.2024.105636. Epub 2024 Jan 9. J Biol Chem. 2024. PMID: 38199572 Free PMC article.

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