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Fast prediction of RNA-RNA interaction.
Salari R, Backofen R, Sahinalp SC. Salari R, et al. Among authors: sahinalp sc. Algorithms Mol Biol. 2010 Jan 4;5:5. doi: 10.1186/1748-7188-5-5. Algorithms Mol Biol. 2010. PMID: 20047661 Free PMC article.
taveRNA: a web suite for RNA algorithms and applications.
Aksay C, Salari R, Karakoc E, Alkan C, Sahinalp SC. Aksay C, et al. Among authors: sahinalp sc. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W325-9. doi: 10.1093/nar/gkm303. Epub 2007 May 8. Nucleic Acids Res. 2007. PMID: 17488837 Free PMC article.
smyRNA: a novel Ab initio ncRNA gene finder.
Salari R, Aksay C, Karakoc E, Unrau PJ, Hajirasouliha I, Sahinalp SC. Salari R, et al. Among authors: sahinalp sc. PLoS One. 2009;4(5):e5433. doi: 10.1371/journal.pone.0005433. Epub 2009 May 5. PLoS One. 2009. PMID: 19415115 Free PMC article.
MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.
Gawronski AR, Uhl M, Zhang Y, Lin YY, Niknafs YS, Ramnarine VR, Malik R, Feng F, Chinnaiyan AM, Collins CC, Sahinalp SC, Backofen R. Gawronski AR, et al. Among authors: sahinalp sc. Bioinformatics. 2018 Sep 15;34(18):3101-3110. doi: 10.1093/bioinformatics/bty208. Bioinformatics. 2018. PMID: 29617966 Free PMC article.
157 results