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An analysis pipeline for the inference of protein-protein interaction networks.
Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS. Taylor RC, et al. Among authors: mcdermott je. Int J Data Min Bioinform. 2009;3(4):409-30. doi: 10.1504/ijdmb.2009.029204. Int J Data Min Bioinform. 2009. PMID: 20052905
Proteome of Salmonella Enterica Serotype Typhimurium Grown in a Low Mg/pH Medium.
Shi L, Ansong C, Smallwood H, Rommereim L, McDermott JE, Brewer HM, Norbeck AD, Taylor RC, Gustin JK, Heffron F, Smith RD, Adkins JN. Shi L, et al. Among authors: mcdermott je. J Proteomics Bioinform. 2009;2:388-397. doi: 10.4172/jpb.1000099. J Proteomics Bioinform. 2009. PMID: 19953200 Free PMC article.
Using the gene ontology to enrich biological pathways.
Sanfilippo A, Baddeley B, Beagley N, McDermott J, Riensche R, Taylor R, Gopalan B. Sanfilippo A, et al. Int J Comput Biol Drug Des. 2009;2(3):221-35. doi: 10.1504/IJCBDD.2009.030114. Epub 2009 Dec 10. Int J Comput Biol Drug Des. 2009. PMID: 20090161
A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.
Matzke MM, Brown JN, Gritsenko MA, Metz TO, Pounds JG, Rodland KD, Shukla AK, Smith RD, Waters KM, McDermott JE, Webb-Robertson BJ. Matzke MM, et al. Among authors: mcdermott je. Proteomics. 2013 Feb;13(3-4):493-503. doi: 10.1002/pmic.201200269. Epub 2012 Nov 8. Proteomics. 2013. PMID: 23019139 Free PMC article. Review.
Modeling dynamic regulatory processes in stroke.
McDermott JE, Jarman K, Taylor R, Lancaster M, Shankaran H, Vartanian KB, Stevens SL, Stenzel-Poore MP, Sanfilippo A. McDermott JE, et al. PLoS Comput Biol. 2012;8(10):e1002722. doi: 10.1371/journal.pcbi.1002722. Epub 2012 Oct 11. PLoS Comput Biol. 2012. PMID: 23071432 Free PMC article.
134 results