Bussemaker HJ - Search Results

1

Paired hormone response elements predict caveolin-1 as a glucocorticoid target gene.

van Batenburg MF, Li H, Polman JA, Lachize S, Datson NA, Bussemaker HJ, Meijer OC. van Batenburg MF, et al. Among authors: bussemaker hj. PLoS One. 2010 Jan 21;5(1):e8839. doi: 10.1371/journal.pone.0008839. PLoS One. 2010. PMID: 20098621 Free PMC article.

2

Regulatory element detection using a probabilistic segmentation model.

Bussemaker HJ, Li H, Siggia ED. Bussemaker HJ, et al. Proc Int Conf Intell Syst Mol Biol. 2000;8:67-74. Proc Int Conf Intell Syst Mol Biol. 2000. PMID: 10977067

3

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes.

Versteeg R, van Schaik BD, van Batenburg MF, Roos M, Monajemi R, Caron H, Bussemaker HJ, van Kampen AH. Versteeg R, et al. Among authors: bussemaker hj. Genome Res. 2003 Sep;13(9):1998-2004. doi: 10.1101/gr.1649303. Epub 2003 Aug 12. Genome Res. 2003. PMID: 12915492 Free PMC article.

4

A gene expression map for the euchromatic genome of Drosophila melanogaster.

Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP. Stolc V, et al. Among authors: bussemaker hj. Science. 2004 Oct 22;306(5696):655-60. doi: 10.1126/science.1101312. Science. 2004. PMID: 15499012

5

Detecting transcriptionally active regions using genomic tiling arrays.

Halasz G, van Batenburg MF, Perusse J, Hua S, Lu XJ, White KP, Bussemaker HJ. Halasz G, et al. Among authors: bussemaker hj. Genome Biol. 2006;7(7):R59. doi: 10.1186/gb-2006-7-7-r59. Genome Biol. 2006. PMID: 16859498 Free PMC article.

6

Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis.

Bussemaker HJ, Li H, Siggia ED. Bussemaker HJ, et al. Proc Natl Acad Sci U S A. 2000 Aug 29;97(18):10096-100. doi: 10.1073/pnas.180265397. Proc Natl Acad Sci U S A. 2000. PMID: 10944202 Free PMC article.

7

Regulatory element detection using correlation with expression.

Bussemaker HJ, Li H, Siggia ED. Bussemaker HJ, et al. Nat Genet. 2001 Feb;27(2):167-71. doi: 10.1038/84792. Nat Genet. 2001. PMID: 11175784

8

Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.

Richards S, Liu Y, Bettencourt BR, Hradecky P, Letovsky S, Nielsen R, Thornton K, Hubisz MJ, Chen R, Meisel RP, Couronne O, Hua S, Smith MA, Zhang P, Liu J, Bussemaker HJ, van Batenburg MF, Howells SL, Scherer SE, Sodergren E, Matthews BB, Crosby MA, Schroeder AJ, Ortiz-Barrientos D, Rives CM, Metzker ML, Muzny DM, Scott G, Steffen D, Wheeler DA, Worley KC, Havlak P, Durbin KJ, Egan A, Gill R, Hume J, Morgan MB, Miner G, Hamilton C, Huang Y, Waldron L, Verduzco D, Clerc-Blankenburg KP, Dubchak I, Noor MA, Anderson W, White KP, Clark AG, Schaeffer SW, Gelbart W, Weinstock GM, Gibbs RA. Richards S, et al. Among authors: bussemaker hj. Genome Res. 2005 Jan;15(1):1-18. doi: 10.1101/gr.3059305. Genome Res. 2005. PMID: 15632085 Free PMC article.

9

Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.

Boorsma A, Lu XJ, Zakrzewska A, Klis FM, Bussemaker HJ. Boorsma A, et al. Among authors: bussemaker hj. PLoS One. 2008 Sep 3;3(9):e3112. doi: 10.1371/journal.pone.0003112. PLoS One. 2008. PMID: 18769540 Free PMC article.

10

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.

Filion GJ, van Bemmel JG, Braunschweig U, Talhout W, Kind J, Ward LD, Brugman W, de Castro IJ, Kerkhoven RM, Bussemaker HJ, van Steensel B. Filion GJ, et al. Among authors: bussemaker hj. Cell. 2010 Oct 15;143(2):212-24. doi: 10.1016/j.cell.2010.09.009. Epub 2010 Sep 30. Cell. 2010. PMID: 20888037 Free PMC article.

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