Alves R - Search Results

1

Optimization and evolution in metabolic pathways: global optimization techniques in Generalized Mass Action models.

Sorribas A, Pozo C, Vilaprinyo E, Guillén-Gosálbez G, Jiménez L, Alves R. Sorribas A, et al. Among authors: alves r. J Biotechnol. 2010 Sep 1;149(3):141-53. doi: 10.1016/j.jbiotec.2010.01.026. Epub 2010 Feb 10. J Biotechnol. 2010. PMID: 20152867

2

Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism: I. The role of the protein pair ferredoxin-ferredoxin reductase (Yah1-Arh1).

Alves R, Herrero E, Sorribas A. Alves R, et al. Proteins. 2004 Aug 1;56(2):354-66. doi: 10.1002/prot.20110. Proteins. 2004. PMID: 15211518

3

Predictive reconstruction of the mitochondrial iron-sulfur cluster assembly metabolism. II. Role of glutaredoxin Grx5.

Alves R, Herrero E, Sorribas A. Alves R, et al. Proteins. 2004 Nov 15;57(3):481-92. doi: 10.1002/prot.20228. Proteins. 2004. PMID: 15382238

4

Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock.

Vilaprinyo E, Alves R, Sorribas A. Vilaprinyo E, et al. Among authors: alves r. BMC Bioinformatics. 2006 Apr 3;7:184. doi: 10.1186/1471-2105-7-184. BMC Bioinformatics. 2006. PMID: 16584550 Free PMC article.

5

Tools for kinetic modeling of biochemical networks.

Alves R, Antunes F, Salvador A. Alves R, et al. Nat Biotechnol. 2006 Jun;24(6):667-72. doi: 10.1038/nbt0606-667. Nat Biotechnol. 2006. PMID: 16763599

6

Cooperativity and saturation in biochemical networks: a saturable formalism using Taylor series approximations.

Sorribas A, Hernández-Bermejo B, Vilaprinyo E, Alves R. Sorribas A, et al. Among authors: alves r. Biotechnol Bioeng. 2007 Aug 1;97(5):1259-77. doi: 10.1002/bit.21316. Biotechnol Bioeng. 2007. PMID: 17187441

7

In silico pathway reconstruction: Iron-sulfur cluster biogenesis in Saccharomyces cerevisiae.

Alves R, Sorribas A. Alves R, et al. BMC Syst Biol. 2007 Jan 31;1:10. doi: 10.1186/1752-0509-1-10. BMC Syst Biol. 2007. PMID: 17408500 Free PMC article.

8

Evolution based on domain combinations: the case of glutaredoxins.

Alves R, Vilaprinyo E, Sorribas A, Herrero E. Alves R, et al. BMC Evol Biol. 2009 Mar 25;9:66. doi: 10.1186/1471-2148-9-66. BMC Evol Biol. 2009. PMID: 19321008 Free PMC article.

9

Minimization of biosynthetic costs in adaptive gene expression responses of yeast to environmental changes.

Vilaprinyo E, Alves R, Sorribas A. Vilaprinyo E, et al. Among authors: alves r. PLoS Comput Biol. 2010 Feb 12;6(2):e1000674. doi: 10.1371/journal.pcbi.1000674. PLoS Comput Biol. 2010. PMID: 20168993 Free PMC article.

10

Saccharomyces cerevisiae as a model organism: a comparative study.

Karathia H, Vilaprinyo E, Sorribas A, Alves R. Karathia H, et al. Among authors: alves r. PLoS One. 2011 Feb 2;6(2):e16015. doi: 10.1371/journal.pone.0016015. PLoS One. 2011. PMID: 21311596 Free PMC article.

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