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Quality control of Platinum Spike dataset by probe-level mixed models.
Khamiakova T, Shkedy Z, Amaratunga D, Talloen W, Göhlmann H, Bijnens L, Kasim A. Khamiakova T, et al. Among authors: amaratunga d. Math Biosci. 2014 Feb;248:1-10. doi: 10.1016/j.mbs.2013.11.004. Epub 2013 Dec 1. Math Biosci. 2014. PMID: 24300569
The high-level similarity of some disparate gene expression measures.
Raghavan N, De Bondt AM, Talloen W, Moechars D, Göhlmann HW, Amaratunga D. Raghavan N, et al. Among authors: amaratunga d. Bioinformatics. 2007 Nov 15;23(22):3032-8. doi: 10.1093/bioinformatics/btm448. Epub 2007 Sep 24. Bioinformatics. 2007. PMID: 17893087
Filtering data from high-throughput experiments based on measurement reliability.
Talloen W, Hochreiter S, Bijnens L, Kasim A, Shkedy Z, Amaratunga D, Göhlmann H. Talloen W, et al. Among authors: amaratunga d. Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):E173-4; author reply E175. doi: 10.1073/pnas.1010604107. Epub 2010 Nov 8. Proc Natl Acad Sci U S A. 2010. PMID: 21059952 Free PMC article. No abstract available.
Class prediction in toxicogenomics.
Raghavan N, Amaratunga D, Nie AY, McMillian M. Raghavan N, et al. Among authors: amaratunga d. J Biopharm Stat. 2005;15(2):327-41. doi: 10.1081/BIP-200048836. J Biopharm Stat. 2005. PMID: 15796298
Enriched random forests.
Amaratunga D, Cabrera J, Lee YS. Amaratunga D, et al. Bioinformatics. 2008 Sep 15;24(18):2010-4. doi: 10.1093/bioinformatics/btn356. Epub 2008 Jul 22. Bioinformatics. 2008. PMID: 18650208
ABC gene-ranking for prediction of drug-induced cholestasis in rats.
Cherkas Y, McMillian MK, Amaratunga D, Raghavan N, Sasaki JC. Cherkas Y, et al. Among authors: amaratunga d. Toxicol Rep. 2016 Jan 18;3:252-261. doi: 10.1016/j.toxrep.2016.01.009. eCollection 2016. Toxicol Rep. 2016. PMID: 28959545 Free PMC article.
47 results