Sudbery I - Search Results

1

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis.

Sudbery I, Enright AJ, Fraser AG, Dunham I. Sudbery I, et al. BMC Genomics. 2010 Mar 15;11:175. doi: 10.1186/1471-2164-11-175. BMC Genomics. 2010. PMID: 20230625 Free PMC article.

2

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

Daelemans C, Ritchie ME, Smits G, Abu-Amero S, Sudbery IM, Forrest MS, Campino S, Clark TG, Stanier P, Kwiatkowski D, Deloukas P, Dermitzakis ET, Tavaré S, Moore GE, Dunham I. Daelemans C, et al. Among authors: sudbery im. BMC Genet. 2010 Apr 19;11:25. doi: 10.1186/1471-2156-11-25. BMC Genet. 2010. PMID: 20403199 Free PMC article.

3

Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels.

Sudbery I, Stalker J, Simpson JT, Keane T, Rust AG, Hurles ME, Walter K, Lynch D, Teboul L, Brown SD, Li H, Ning Z, Nadeau JH, Croniger CM, Durbin R, Adams DJ. Sudbery I, et al. Genome Biol. 2009;10(10):R112. doi: 10.1186/gb-2009-10-10-r112. Epub 2009 Oct 13. Genome Biol. 2009. PMID: 19825173 Free PMC article.

4

Next-generation sequencing of vertebrate experimental organisms.

Turner DJ, Keane TM, Sudbery I, Adams DJ. Turner DJ, et al. Among authors: sudbery i. Mamm Genome. 2009 Jun;20(6):327-38. doi: 10.1007/s00335-009-9187-4. Epub 2009 May 19. Mamm Genome. 2009. PMID: 19452216 Free PMC article. Review.

5

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer.

Rajan P, Stockley J, Sudbery IM, Fleming JT, Hedley A, Kalna G, Sims D, Ponting CP, Heger A, Robson CN, McMenemin RM, Pedley ID, Leung HY. Rajan P, et al. BMC Cancer. 2014 Dec 18;14:977. doi: 10.1186/1471-2407-14-977. BMC Cancer. 2014. PMID: 25519703 Free PMC article.

6

Sequencing depth and coverage: key considerations in genomic analyses.

Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP. Sims D, et al. Among authors: sudbery i. Nat Rev Genet. 2014 Feb;15(2):121-32. doi: 10.1038/nrg3642. Nat Rev Genet. 2014. PMID: 24434847 Review.

7

Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy.

Rajan P, Sudbery IM, Villasevil ME, Mui E, Fleming J, Davis M, Ahmad I, Edwards J, Sansom OJ, Sims D, Ponting CP, Heger A, McMenemin RM, Pedley ID, Leung HY. Rajan P, et al. Among authors: sudbery im. Eur Urol. 2014 Jul;66(1):32-9. doi: 10.1016/j.eururo.2013.08.011. Epub 2013 Aug 14. Eur Urol. 2014. PMID: 24054872 Free PMC article.

8

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy.

Smith T, Heger A, Sudbery I. Smith T, et al. Among authors: sudbery i. Genome Res. 2017 Mar;27(3):491-499. doi: 10.1101/gr.209601.116. Epub 2017 Jan 18. Genome Res. 2017. PMID: 28100584 Free PMC article.

9

CGAT: computational genomics analysis toolkit.

Sims D, Ilott NE, Sansom SN, Sudbery IM, Johnson JS, Fawcett KA, Berlanga-Taylor AJ, Luna-Valero S, Ponting CP, Heger A. Sims D, et al. Bioinformatics. 2014 May 1;30(9):1290-1. doi: 10.1093/bioinformatics/btt756. Epub 2014 Jan 5. Bioinformatics. 2014. PMID: 24395753 Free PMC article.

10

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data.

Srivastava A, Malik L, Smith T, Sudbery I, Patro R. Srivastava A, et al. Among authors: sudbery i. Genome Biol. 2019 Mar 27;20(1):65. doi: 10.1186/s13059-019-1670-y. Genome Biol. 2019. PMID: 30917859 Free PMC article.

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