Shkolnisky Y - Search Results

1

A clustering approach to multireference alignment of single-particle projections in electron microscopy.

Sorzano CO, Bilbao-Castro JR, Shkolnisky Y, Alcorlo M, Melero R, Caffarena-Fernández G, Li M, Xu G, Marabini R, Carazo JM. Sorzano CO, et al. Among authors: shkolnisky y. J Struct Biol. 2010 Aug;171(2):197-206. doi: 10.1016/j.jsb.2010.03.011. Epub 2010 Mar 31. J Struct Biol. 2010. PMID: 20362059 Free PMC article.

2

A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs.

Abrishami V, Zaldívar-Peraza A, de la Rosa-Trevín JM, Vargas J, Otón J, Marabini R, Shkolnisky Y, Carazo JM, Sorzano CO. Abrishami V, et al. Among authors: shkolnisky y. Bioinformatics. 2013 Oct 1;29(19):2460-8. doi: 10.1093/bioinformatics/btt429. Epub 2013 Aug 19. Bioinformatics. 2013. PMID: 23958728

3

Detecting consistent common lines in cryo-EM by voting.

Singer A, Coifman RR, Sigworth FJ, Chester DW, Shkolnisky Y. Singer A, et al. Among authors: shkolnisky y. J Struct Biol. 2010 Mar;169(3):312-22. doi: 10.1016/j.jsb.2009.11.003. Epub 2009 Nov 17. J Struct Biol. 2010. PMID: 19925867 Free PMC article.

4

Common lines modeling for reference free Ab-initio reconstruction in cryo-EM.

Greenberg I, Shkolnisky Y. Greenberg I, et al. Among authors: shkolnisky y. J Struct Biol. 2017 Nov;200(2):106-117. doi: 10.1016/j.jsb.2017.09.007. Epub 2017 Sep 21. J Struct Biol. 2017. PMID: 28943480

5

KLT picker: Particle picking using data-driven optimal templates.

Eldar A, Landa B, Shkolnisky Y. Eldar A, et al. Among authors: shkolnisky y. J Struct Biol. 2020 May 1;210(2):107473. doi: 10.1016/j.jsb.2020.107473. Epub 2020 Feb 7. J Struct Biol. 2020. PMID: 32035993

6

ASOCEM: Automatic Segmentation Of Contaminations in cryo-EM.

Eldar A, Amos I, Shkolnisky Y. Eldar A, et al. Among authors: shkolnisky y. J Struct Biol. 2022 Sep;214(3):107871. doi: 10.1016/j.jsb.2022.107871. Epub 2022 May 21. J Struct Biol. 2022. PMID: 35609785

7

Graph Laplacian tomography from unknown random projections.

Coifman RR, Shkolnisky Y, Sigworth FJ, Singer A. Coifman RR, et al. Among authors: shkolnisky y. IEEE Trans Image Process. 2008 Oct;17(10):1891-9. doi: 10.1109/TIP.2008.2002305. IEEE Trans Image Process. 2008. PMID: 18784036

8

Reference Free Structure Determination through Eigenvectors of Center of Mass Operators.

Coifman RR, Shkolnisky Y, Sigworth FJ, Singer A. Coifman RR, et al. Among authors: shkolnisky y. Appl Comput Harmon Anal. 2010 May;28(3):296-312. doi: 10.1016/j.acha.2009.11.003. Appl Comput Harmon Anal. 2010. PMID: 20436952 Free PMC article.

9

Viewing Angle Classification of Cryo-Electron Microscopy Images Using Eigenvectors.

Singer A, Zhao Z, Shkolnisky Y, Hadani R. Singer A, et al. Among authors: shkolnisky y. SIAM J Imaging Sci. 2011 Jun 23;4(2):723-759. doi: 10.1137/090778390. SIAM J Imaging Sci. 2011. PMID: 22506089 Free PMC article.

10

Three-Dimensional Structure Determination from Common Lines in Cryo-EM by Eigenvectors and Semidefinite Programming().

Singer A, Shkolnisky Y. Singer A, et al. Among authors: shkolnisky y. SIAM J Imaging Sci. 2011 Jun 7;4(2):543-572. doi: 10.1137/090767777. SIAM J Imaging Sci. 2011. PMID: 22536457 Free PMC article.

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