Min R - Search Results

1

Exploiting the determinants of stochastic gene expression in Saccharomyces cerevisiae for genome-wide prediction of expression noise.

Li J, Min R, Vizeacoumar FJ, Jin K, Xin X, Zhang Z. Li J, et al. Among authors: min r. Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10472-7. doi: 10.1073/pnas.0914302107. Epub 2010 May 20. Proc Natl Acad Sci U S A. 2010. PMID: 20489180 Free PMC article.

2

PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae.

Jin K, Li J, Vizeacoumar FS, Li Z, Min R, Zamparo L, Vizeacoumar FJ, Datti A, Andrews B, Boone C, Zhang Z. Jin K, et al. Among authors: min r. Nucleic Acids Res. 2012 Jan;40(Database issue):D687-94. doi: 10.1093/nar/gkr827. Epub 2011 Oct 18. Nucleic Acids Res. 2012. PMID: 22009677 Free PMC article.

3

A probabilistic framework to improve microrna target prediction by incorporating proteomics data.

Li J, Min R, Bonner A, Zhang Z. Li J, et al. Among authors: min r. J Bioinform Comput Biol. 2009 Dec;7(6):955-72. doi: 10.1142/s021972000900445x. J Bioinform Comput Biol. 2009. PMID: 20014473

4

Gene expression variability within and between human populations and implications toward disease susceptibility.

Li J, Liu Y, Kim T, Min R, Zhang Z. Li J, et al. Among authors: min r. PLoS Comput Biol. 2010 Aug 26;6(8):e1000910. doi: 10.1371/journal.pcbi.1000910. PLoS Comput Biol. 2010. PMID: 20865155 Free PMC article.

5

Systematic exploration of essential yeast gene function with temperature-sensitive mutants.

Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, Lu H, Yan Z, Jin K, Barker S, Datti A, Giaever G, Nislow C, Bulawa C, Myers CL, Costanzo M, Gingras AC, Zhang Z, Blomberg A, Bloom K, Andrews B, Boone C. Li Z, et al. Among authors: min r. Nat Biotechnol. 2011 Apr;29(4):361-7. doi: 10.1038/nbt.1832. Epub 2011 Mar 27. Nat Biotechnol. 2011. PMID: 21441928 Free PMC article.

6

Learned random-walk kernels and empirical-map kernels for protein sequence classification.

Min R, Bonner A, Li J, Zhang Z. Min R, et al. J Comput Biol. 2009 Mar;16(3):457-74. doi: 10.1089/cmb.2008.0031. J Comput Biol. 2009. PMID: 19254184

7

Architecture of the human regulatory network derived from ENCODE data.

Gerstein MB, Kundaje A, Hariharan M, Landt SG, Yan KK, Cheng C, Mu XJ, Khurana E, Rozowsky J, Alexander R, Min R, Alves P, Abyzov A, Addleman N, Bhardwaj N, Boyle AP, Cayting P, Charos A, Chen DZ, Cheng Y, Clarke D, Eastman C, Euskirchen G, Frietze S, Fu Y, Gertz J, Grubert F, Harmanci A, Jain P, Kasowski M, Lacroute P, Leng JJ, Lian J, Monahan H, O'Geen H, Ouyang Z, Partridge EC, Patacsil D, Pauli F, Raha D, Ramirez L, Reddy TE, Reed B, Shi M, Slifer T, Wang J, Wu L, Yang X, Yip KY, Zilberman-Schapira G, Batzoglou S, Sidow A, Farnham PJ, Myers RM, Weissman SM, Snyder M. Gerstein MB, et al. Among authors: min r. Nature. 2012 Sep 6;489(7414):91-100. doi: 10.1038/nature11245. Nature. 2012. PMID: 22955619 Free PMC article.

8

Understanding transcriptional regulation by integrative analysis of transcription factor binding data.

Cheng C, Alexander R, Min R, Leng J, Yip KY, Rozowsky J, Yan KK, Dong X, Djebali S, Ruan Y, Davis CA, Carninci P, Lassman T, Gingeras TR, Guigó R, Birney E, Weng Z, Snyder M, Gerstein M. Cheng C, et al. Among authors: min r. Genome Res. 2012 Sep;22(9):1658-67. doi: 10.1101/gr.136838.111. Genome Res. 2012. PMID: 22955978 Free PMC article.

9

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium. ENCODE Project Consortium. Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247. Nature. 2012. PMID: 22955616 Free PMC article.

10

TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles.

Cheng C, Min R, Gerstein M. Cheng C, et al. Among authors: min r. Bioinformatics. 2011 Dec 1;27(23):3221-7. doi: 10.1093/bioinformatics/btr552. Epub 2011 Oct 29. Bioinformatics. 2011. PMID: 22039215 Free PMC article.

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