Nilmeier JP - Search Results

1

Antibodies as a model system for comparative model refinement.

Sellers BD, Nilmeier JP, Jacobson MP. Sellers BD, et al. Among authors: nilmeier jp. Proteins. 2010 Aug 15;78(11):2490-505. doi: 10.1002/prot.22757. Proteins. 2010. PMID: 20602354 Free PMC article.

2

Assessing protein loop flexibility by hierarchical Monte Carlo sampling.

Nilmeier J, Hua L, Coutsias EA, Jacobson MP. Nilmeier J, et al. J Chem Theory Comput. 2011 May 10;7(5):1564-1574. doi: 10.1021/ct1006696. J Chem Theory Comput. 2011. PMID: 21743800 Free PMC article.

3

Monte Carlo Sampling with Hierarchical Move Sets: POSH Monte Carlo.

Nilmeier J, Jacobson MP. Nilmeier J, et al. J Chem Theory Comput. 2009 Aug 11;5(8):1968-84. doi: 10.1021/ct8005166. J Chem Theory Comput. 2009. PMID: 26613140

4

Multiscale Monte Carlo Sampling of Protein Sidechains: Application to Binding Pocket Flexibility.

Nilmeier J, Jacobson M. Nilmeier J, et al. J Chem Theory Comput. 2008 May;4(5):835-846. doi: 10.1021/ct700334a. J Chem Theory Comput. 2008. PMID: 19119325 Free PMC article.

5

Rapid catalytic template searching as an enzyme function prediction procedure.

Nilmeier JP, Kirshner DA, Wong SE, Lightstone FC. Nilmeier JP, et al. PLoS One. 2013 May 10;8(5):e62535. doi: 10.1371/journal.pone.0062535. Print 2013. PLoS One. 2013. PMID: 23675414 Free PMC article.

6

Catalytic site identification--a web server to identify catalytic site structural matches throughout PDB.

Kirshner DA, Nilmeier JP, Lightstone FC. Kirshner DA, et al. Among authors: nilmeier jp. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W256-65. doi: 10.1093/nar/gkt403. Epub 2013 May 16. Nucleic Acids Res. 2013. PMID: 23680785 Free PMC article.

7

A method to predict blood-brain barrier permeability of drug-like compounds using molecular dynamics simulations.

Carpenter TS, Kirshner DA, Lau EY, Wong SE, Nilmeier JP, Lightstone FC. Carpenter TS, et al. Among authors: nilmeier jp. Biophys J. 2014 Aug 5;107(3):630-641. doi: 10.1016/j.bpj.2014.06.024. Biophys J. 2014. PMID: 25099802 Free PMC article.

8

A peptide-based method for 13C Metabolic Flux Analysis in microbial communities.

Ghosh A, Nilmeier J, Weaver D, Adams PD, Keasling JD, Mukhopadhyay A, Petzold CJ, Martín HG. Ghosh A, et al. PLoS Comput Biol. 2014 Sep 4;10(9):e1003827. doi: 10.1371/journal.pcbi.1003827. eCollection 2014 Sep. PLoS Comput Biol. 2014. PMID: 25188426 Free PMC article.

9

Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation.

Nilmeier JP, Crooks GE, Minh DD, Chodera JD. Nilmeier JP, et al. Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):E1009-18. doi: 10.1073/pnas.1106094108. Epub 2011 Oct 24. Proc Natl Acad Sci U S A. 2011. PMID: 22025687 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

9 results

Search Page

Filters