Li K - Search Results

1

VariantClassifier: A hierarchical variant classifier for annotated genomes.

Li K, Stockwell TB. Li K, et al. BMC Res Notes. 2010 Jul 13;3:191. doi: 10.1186/1756-0500-3-191. BMC Res Notes. 2010. PMID: 20626889 Free PMC article.

2

ANDES: Statistical tools for the ANalyses of DEep Sequencing.

Li K, Venter E, Yooseph S, Stockwell TB, Eckerle LD, Denison MR, Spiro DJ, Methé BA. Li K, et al. BMC Res Notes. 2010 Jul 15;3:199. doi: 10.1186/1756-0500-3-199. BMC Res Notes. 2010. PMID: 20633290 Free PMC article.

3

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.

Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S. Li K, et al. BMC Bioinformatics. 2008 Apr 11;9:191. doi: 10.1186/1471-2105-9-191. BMC Bioinformatics. 2008. PMID: 18405373 Free PMC article.

4

Genetic variation in an individual human exome.

Ng PC, Levy S, Huang J, Stockwell TB, Walenz BP, Li K, Axelrod N, Busam DA, Strausberg RL, Venter JC. Ng PC, et al. Among authors: li k. PLoS Genet. 2008 Aug 15;4(8):e1000160. doi: 10.1371/journal.pgen.1000160. PLoS Genet. 2008. PMID: 18704161 Free PMC article.

5

Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing.

Li K, Shrivastava S, Brownley A, Katzel D, Bera J, Nguyen AT, Thovarai V, Halpin R, Stockwell TB. Li K, et al. Virol J. 2012 Nov 6;9:261. doi: 10.1186/1743-422X-9-261. Virol J. 2012. PMID: 23131097 Free PMC article.

6

Degenerate primer design for highly variable genomes.

Li K, Shrivastava S, Stockwell TB. Li K, et al. Methods Mol Biol. 2015;1275:103-15. doi: 10.1007/978-1-4939-2365-6_7. Methods Mol Biol. 2015. PMID: 25697654

7

Infidelity of SARS-CoV Nsp14-exonuclease mutant virus replication is revealed by complete genome sequencing.

Eckerle LD, Becker MM, Halpin RA, Li K, Venter E, Lu X, Scherbakova S, Graham RL, Baric RS, Stockwell TB, Spiro DJ, Denison MR. Eckerle LD, et al. Among authors: li k. PLoS Pathog. 2010 May 6;6(5):e1000896. doi: 10.1371/journal.ppat.1000896. PLoS Pathog. 2010. PMID: 20463816 Free PMC article.

8

Aggressive assembly of pyrosequencing reads with mates.

Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G. Miller JR, et al. Among authors: li k. Bioinformatics. 2008 Dec 15;24(24):2818-24. doi: 10.1093/bioinformatics/btn548. Epub 2008 Oct 24. Bioinformatics. 2008. PMID: 18952627 Free PMC article.

9

METAREP: JCVI metagenomics reports--an open source tool for high-performance comparative metagenomics.

Goll J, Rusch DB, Tanenbaum DM, Thiagarajan M, Li K, Methé BA, Yooseph S. Goll J, et al. Among authors: li k. Bioinformatics. 2010 Oct 15;26(20):2631-2. doi: 10.1093/bioinformatics/btq455. Epub 2010 Aug 26. Bioinformatics. 2010. PMID: 20798169 Free PMC article.

10

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, Friedman R, Halpern A, Khouri H, Kravitz SA, Lauro FM, Li K, Rogers YH, Strausberg R, Sutton G, Tallon L, Thomas T, Venter E, Frazier M, Venter JC. Goldberg SM, et al. Among authors: li k. Proc Natl Acad Sci U S A. 2006 Jul 25;103(30):11240-5. doi: 10.1073/pnas.0604351103. Epub 2006 Jul 13. Proc Natl Acad Sci U S A. 2006. PMID: 16840556 Free PMC article.

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