Lipson D - Search Results

1

New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.

Kapranov P, Ozsolak F, Kim SW, Foissac S, Lipson D, Hart C, Roels S, Borel C, Antonarakis SE, Monaghan AP, John B, Milos PM. Kapranov P, et al. Among authors: lipson d. Nature. 2010 Jul 29;466(7306):642-6. doi: 10.1038/nature09190. Nature. 2010. PMID: 20671709 Free PMC article.

2

Quantification of the yeast transcriptome by single-molecule sequencing.

Lipson D, Raz T, Kieu A, Jones DR, Giladi E, Thayer E, Thompson JF, Letovsky S, Milos P, Causey M. Lipson D, et al. Nat Biotechnol. 2009 Jul;27(7):652-8. doi: 10.1038/nbt.1551. Epub 2009 Jul 5. Nat Biotechnol. 2009. PMID: 19581875

3

Single-molecule sequencing: sequence methods to enable accurate quantitation.

Hart C, Lipson D, Ozsolak F, Raz T, Steinmann K, Thompson J, Milos PM. Hart C, et al. Among authors: lipson d. Methods Enzymol. 2010;472:407-30. doi: 10.1016/S0076-6879(10)72002-4. Methods Enzymol. 2010. PMID: 20580974

4

Error tolerant indexing and alignment of short reads with covering template families.

Giladi E, Healy J, Myers G, Hart C, Kapranov P, Lipson D, Roels S, Thayer E, Letovsky S. Giladi E, et al. Among authors: lipson d. J Comput Biol. 2010 Oct;17(10):1397-1411. doi: 10.1089/cmb.2010.0005. J Comput Biol. 2010. PMID: 20937014

5

Protocol dependence of sequencing-based gene expression measurements.

Raz T, Kapranov P, Lipson D, Letovsky S, Milos PM, Thompson JF. Raz T, et al. Among authors: lipson d. PLoS One. 2011 May 6;6(5):e19287. doi: 10.1371/journal.pone.0019287. PLoS One. 2011. PMID: 21573114 Free PMC article.

6

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM. Raz T, et al. Among authors: lipson d. Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3. Methods Mol Biol. 2011. PMID: 21431761

7

Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations.

Thompson JF, Reifenberger JG, Giladi E, Kerouac K, Gill J, Hansen E, Kahvejian A, Kapranov P, Knope T, Lipson D, Steinmann KE, Milos PM. Thompson JF, et al. Among authors: lipson d. Genome Res. 2012 Feb;22(2):340-5. doi: 10.1101/gr.122192.111. Epub 2011 Jul 15. Genome Res. 2012. PMID: 21765009 Free PMC article.

8

A comparison of single molecule and amplification based sequencing of cancer transcriptomes.

Sam LT, Lipson D, Raz T, Cao X, Thompson J, Milos PM, Robinson D, Chinnaiyan AM, Kumar-Sinha C, Maher CA. Sam LT, et al. Among authors: lipson d. PLoS One. 2011 Mar 1;6(3):e17305. doi: 10.1371/journal.pone.0017305. PLoS One. 2011. PMID: 21390249 Free PMC article.

9

Virtual terminator nucleotides for next-generation DNA sequencing.

Bowers J, Mitchell J, Beer E, Buzby PR, Causey M, Efcavitch JW, Jarosz M, Krzymanska-Olejnik E, Kung L, Lipson D, Lowman GM, Marappan S, McInerney P, Platt A, Roy A, Siddiqi SM, Steinmann K, Thompson JF. Bowers J, et al. Among authors: lipson d. Nat Methods. 2009 Aug;6(8):593-5. doi: 10.1038/nmeth.1354. Epub 2009 Jul 20. Nat Methods. 2009. PMID: 19620973 Free PMC article.

10

Identification of new ALK and RET gene fusions from colorectal and lung cancer biopsies.

Lipson D, Capelletti M, Yelensky R, Otto G, Parker A, Jarosz M, Curran JA, Balasubramanian S, Bloom T, Brennan KW, Donahue A, Downing SR, Frampton GM, Garcia L, Juhn F, Mitchell KC, White E, White J, Zwirko Z, Peretz T, Nechushtan H, Soussan-Gutman L, Kim J, Sasaki H, Kim HR, Park SI, Ercan D, Sheehan CE, Ross JS, Cronin MT, Jänne PA, Stephens PJ. Lipson D, et al. Nat Med. 2012 Feb 12;18(3):382-4. doi: 10.1038/nm.2673. Nat Med. 2012. PMID: 22327622 Free PMC article.

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