Sosnick TR - Search Results

1

Modeling the hydration layer around proteins: HyPred.

Virtanen JJ, Makowski L, Sosnick TR, Freed KF. Virtanen JJ, et al. Among authors: sosnick tr. Biophys J. 2010 Sep 8;99(5):1611-9. doi: 10.1016/j.bpj.2010.06.027. Biophys J. 2010. PMID: 20816074 Free PMC article.

2

Large-scale context in protein folding: villin headpiece.

Fernández A, Shen MY, Colubri A, Sosnick TR, Berry RS, Freed KF. Fernández A, et al. Among authors: sosnick tr. Biochemistry. 2003 Jan 28;42(3):664-71. doi: 10.1021/bi026510i. Biochemistry. 2003. PMID: 12534278 Free article.

3

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides.

Zaman MH, Shen MY, Berry RS, Freed KF, Sosnick TR. Zaman MH, et al. Among authors: sosnick tr. J Mol Biol. 2003 Aug 15;331(3):693-711. doi: 10.1016/s0022-2836(03)00765-4. J Mol Biol. 2003. PMID: 12899838

4

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library.

Jha AK, Colubri A, Zaman MH, Koide S, Sosnick TR, Freed KF. Jha AK, et al. Among authors: sosnick tr. Biochemistry. 2005 Jul 19;44(28):9691-702. doi: 10.1021/bi0474822. Biochemistry. 2005. PMID: 16008354

5

Statistical coil model of the unfolded state: resolving the reconciliation problem.

Jha AK, Colubri A, Freed KF, Sosnick TR. Jha AK, et al. Among authors: sosnick tr. Proc Natl Acad Sci U S A. 2005 Sep 13;102(37):13099-104. doi: 10.1073/pnas.0506078102. Epub 2005 Aug 30. Proc Natl Acad Sci U S A. 2005. PMID: 16131545 Free PMC article.

6

Small proteins fold through transition states with native-like topologies.

Pandit AD, Jha A, Freed KF, Sosnick TR. Pandit AD, et al. Among authors: sosnick tr. J Mol Biol. 2006 Aug 25;361(4):755-70. doi: 10.1016/j.jmb.2006.06.041. Epub 2006 Jul 7. J Mol Biol. 2006. PMID: 16876194

7

Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.

Colubri A, Jha AK, Shen MY, Sali A, Berry RS, Sosnick TR, Freed KF. Colubri A, et al. Among authors: sosnick tr. J Mol Biol. 2006 Nov 3;363(4):835-57. doi: 10.1016/j.jmb.2006.08.035. Epub 2006 Aug 18. J Mol Biol. 2006. PMID: 16982067

8

Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors.

Fitzgerald JE, Jha AK, Sosnick TR, Freed KF. Fitzgerald JE, et al. Among authors: sosnick tr. Biochemistry. 2007 Jan 23;46(3):669-82. doi: 10.1021/bi061575x. Biochemistry. 2007. PMID: 17223689

9

Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.

Fitzgerald JE, Jha AK, Colubri A, Sosnick TR, Freed KF. Fitzgerald JE, et al. Among authors: sosnick tr. Protein Sci. 2007 Oct;16(10):2123-39. doi: 10.1110/ps.072939707. Protein Sci. 2007. PMID: 17893359 Free PMC article.

10

Quantifying the structural requirements of the folding transition state of protein A and other systems.

Baxa MC, Freed KF, Sosnick TR. Baxa MC, et al. Among authors: sosnick tr. J Mol Biol. 2008 Sep 19;381(5):1362-81. doi: 10.1016/j.jmb.2008.06.067. Epub 2008 Jul 1. J Mol Biol. 2008. PMID: 18625237 Free PMC article.

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