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A window into third-generation sequencing.
Schadt EE, Turner S, Kasarskis A. Schadt EE, et al. Among authors: kasarskis a. Hum Mol Genet. 2010 Oct 15;19(R2):R227-40. doi: 10.1093/hmg/ddq416. Epub 2010 Sep 21. Hum Mol Genet. 2010. PMID: 20858600 Review.
The origin of the Haitian cholera outbreak strain.
Chin CS, Sorenson J, Harris JB, Robins WP, Charles RC, Jean-Charles RR, Bullard J, Webster DR, Kasarskis A, Peluso P, Paxinos EE, Yamaichi Y, Calderwood SB, Mekalanos JJ, Schadt EE, Waldor MK. Chin CS, et al. Among authors: kasarskis a. N Engl J Med. 2011 Jan 6;364(1):33-42. doi: 10.1056/NEJMoa1012928. Epub 2010 Dec 9. N Engl J Med. 2011. PMID: 21142692 Free PMC article.
A hybrid approach for the automated finishing of bacterial genomes.
Bashir A, Klammer A, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, Mollova E, Luong K, Lin S, LaMay B, Joshi A, Rowe L, Frace M, Tarr CL, Turnsek M, Davis BM, Kasarskis A, Mekalanos JJ, Waldor MK, Schadt EE. Bashir A, et al. Among authors: kasarskis a. Nat Biotechnol. 2012 Jul 1;30(7):701-707. doi: 10.1038/nbt.2288. Nat Biotechnol. 2012. PMID: 22750883 Free PMC article.
Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases.
Schadt EE, Banerjee O, Fang G, Feng Z, Wong WH, Zhang X, Kislyuk A, Clark TA, Luong K, Keren-Paz A, Chess A, Kumar V, Chen-Plotkin A, Sondheimer N, Korlach J, Kasarskis A. Schadt EE, et al. Among authors: kasarskis a. Genome Res. 2013 Jan;23(1):129-41. doi: 10.1101/gr.136739.111. Epub 2012 Oct 23. Genome Res. 2013. PMID: 23093720 Free PMC article.
A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells.
Yang J, Hagen J, Guntur KV, Allette K, Schuyler S, Ranjan J, Petralia F, Gesta S, Sebra R, Mahajan M, Zhang B, Zhu J, Houten S, Kasarskis A, Vishnudas VK, Akmaev VR, Sarangarajan R, Narain NR, Schadt EE, Argmann CA, Tu Z. Yang J, et al. Among authors: kasarskis a. BMC Genomics. 2017 Dec 22;18(1):987. doi: 10.1186/s12864-017-4359-1. BMC Genomics. 2017. PMID: 29273013 Free PMC article.
102 results