Dewey CN - Search Results

1

BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis.

Larget BR, Kotha SK, Dewey CN, Ané C. Larget BR, et al. Among authors: dewey cn. Bioinformatics. 2010 Nov 15;26(22):2910-1. doi: 10.1093/bioinformatics/btq539. Epub 2010 Sep 21. Bioinformatics. 2010. PMID: 20861028

2

Fine-scale phylogenetic discordance across the house mouse genome.

White MA, Ané C, Dewey CN, Larget BR, Payseur BA. White MA, et al. Among authors: dewey cn. PLoS Genet. 2009 Nov;5(11):e1000729. doi: 10.1371/journal.pgen.1000729. Epub 2009 Nov 20. PLoS Genet. 2009. PMID: 19936022 Free PMC article.

3

RNA-Seq gene expression estimation with read mapping uncertainty.

Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN. Li B, et al. Among authors: dewey cn. Bioinformatics. 2010 Feb 15;26(4):493-500. doi: 10.1093/bioinformatics/btp692. Epub 2009 Dec 18. Bioinformatics. 2010. PMID: 20022975 Free PMC article.

4

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.

LeGault LH, Dewey CN. LeGault LH, et al. Among authors: dewey cn. Bioinformatics. 2013 Sep 15;29(18):2300-10. doi: 10.1093/bioinformatics/btt396. Epub 2013 Jul 11. Bioinformatics. 2013. PMID: 23846746 Free PMC article.

5

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.

Leng N, Li Y, McIntosh BE, Nguyen BK, Duffin B, Tian S, Thomson JA, Dewey CN, Stewart R, Kendziorski C. Leng N, et al. Among authors: dewey cn. Bioinformatics. 2015 Aug 15;31(16):2614-22. doi: 10.1093/bioinformatics/btv193. Epub 2015 Apr 5. Bioinformatics. 2015. PMID: 25847007 Free PMC article.

6

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.

Bernstein MN, Doan A, Dewey CN. Bernstein MN, et al. Among authors: dewey cn. Bioinformatics. 2017 Sep 15;33(18):2914-2923. doi: 10.1093/bioinformatics/btx334. Bioinformatics. 2017. PMID: 28535296 Free PMC article.

7

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Li B, Dewey CN. Li B, et al. Among authors: dewey cn. BMC Bioinformatics. 2011 Aug 4;12:323. doi: 10.1186/1471-2105-12-323. BMC Bioinformatics. 2011. PMID: 21816040 Free PMC article.

8

Integrative analysis with ChIP-seq advances the limits of transcript quantification from RNA-seq.

Liu P, Sanalkumar R, Bresnick EH, Keleş S, Dewey CN. Liu P, et al. Among authors: dewey cn. Genome Res. 2016 Aug;26(8):1124-33. doi: 10.1101/gr.199174.115. Epub 2016 Jul 12. Genome Res. 2016. PMID: 27405803 Free PMC article.

9

Positional orthology: putting genomic evolutionary relationships into context.

Dewey CN. Dewey CN. Brief Bioinform. 2011 Sep;12(5):401-12. doi: 10.1093/bib/bbr040. Epub 2011 Jun 24. Brief Bioinform. 2011. PMID: 21705766 Free PMC article. Review.

10

Whole-Genome Alignment.

Dewey CN. Dewey CN. Methods Mol Biol. 2019;1910:121-147. doi: 10.1007/978-1-4939-9074-0_4. Methods Mol Biol. 2019. PMID: 31278663

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