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GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop.
Montojo J, Zuberi K, Rodriguez H, Kazi F, Wright G, Donaldson SL, Morris Q, Bader GD. Montojo J, et al. Among authors: bader gd. Bioinformatics. 2010 Nov 15;26(22):2927-8. doi: 10.1093/bioinformatics/btq562. Epub 2010 Oct 5. Bioinformatics. 2010. PMID: 20926419 Free PMC article.
Computational prediction of cancer-gene function.
Hu P, Bader G, Wigle DA, Emili A. Hu P, et al. Nat Rev Cancer. 2007 Jan;7(1):23-34. doi: 10.1038/nrc2036. Epub 2006 Dec 14. Nat Rev Cancer. 2007. PMID: 17167517 Review.
NetMatch: a Cytoscape plugin for searching biological networks.
Ferro A, Giugno R, Pigola G, Pulvirenti A, Skripin D, Bader GD, Shasha D. Ferro A, et al. Among authors: bader gd. Bioinformatics. 2007 Apr 1;23(7):910-2. doi: 10.1093/bioinformatics/btm032. Epub 2007 Feb 3. Bioinformatics. 2007. PMID: 17277332
Cytoscape ESP: simple search of complex biological networks.
Ashkenazi M, Bader GD, Kuchinsky A, Moshelion M, States DJ. Ashkenazi M, et al. Among authors: bader gd. Bioinformatics. 2008 Jun 15;24(12):1465-6. doi: 10.1093/bioinformatics/btn208. Epub 2008 Apr 28. Bioinformatics. 2008. PMID: 18445605 Free PMC article.
Exploring biological networks with Cytoscape software.
Yeung N, Cline MS, Kuchinsky A, Smoot ME, Bader GD. Yeung N, et al. Among authors: bader gd. Curr Protoc Bioinformatics. 2008 Sep;Chapter 8:8.13.1-8.13.20. doi: 10.1002/0471250953.bi0813s23. Curr Protoc Bioinformatics. 2008. PMID: 18819078
The genetic landscape of a cell.
Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C. Costanzo M, et al. Among authors: bader gd. Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823. Science. 2010. PMID: 20093466 Free PMC article.
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function.
Warde-Farley D, Donaldson SL, Comes O, Zuberi K, Badrawi R, Chao P, Franz M, Grouios C, Kazi F, Lopes CT, Maitland A, Mostafavi S, Montojo J, Shao Q, Wright G, Bader GD, Morris Q. Warde-Farley D, et al. Among authors: bader gd. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W214-20. doi: 10.1093/nar/gkq537. Nucleic Acids Res. 2010. PMID: 20576703 Free PMC article.
Cytoscape Web: an interactive web-based network browser.
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Lopes CT, et al. Among authors: bader gd. Bioinformatics. 2010 Sep 15;26(18):2347-8. doi: 10.1093/bioinformatics/btq430. Epub 2010 Jul 23. Bioinformatics. 2010. PMID: 20656902 Free PMC article.
331 results