Nielsen R - Search Results

1

Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation.

Andrés AM, Dennis MY, Kretzschmar WW, Cannons JL, Lee-Lin SQ, Hurle B; NISC Comparative Sequencing Program; Schwartzberg PL, Williamson SH, Bustamante CD, Nielsen R, Clark AG, Green ED. Andrés AM, et al. Among authors: nielsen r. PLoS Genet. 2010 Oct 14;6(10):e1001157. doi: 10.1371/journal.pgen.1001157. PLoS Genet. 2010. PMID: 20976248 Free PMC article.

2

A maximum likelihood method for analyzing pseudogene evolution: implications for silent site evolution in humans and rodents.

Bustamante CD, Nielsen R, Hartl DL. Bustamante CD, et al. Among authors: nielsen r. Mol Biol Evol. 2002 Jan;19(1):110-7. doi: 10.1093/oxfordjournals.molbev.a003975. Mol Biol Evol. 2002. PMID: 11752196

3

The cost of inbreeding in Arabidopsis.

Bustamante CD, Nielsen R, Sawyer SA, Olsen KM, Purugganan MD, Hartl DL. Bustamante CD, et al. Among authors: nielsen r. Nature. 2002 Apr 4;416(6880):531-4. doi: 10.1038/416531a. Nature. 2002. PMID: 11932744

4

Maximum likelihood and Bayesian methods for estimating the distribution of selective effects among classes of mutations using DNA polymorphism data.

Bustamante CD, Nielsen R, Hartl DL. Bustamante CD, et al. Among authors: nielsen r. Theor Popul Biol. 2003 Mar;63(2):91-103. doi: 10.1016/s0040-5809(02)00050-3. Theor Popul Biol. 2003. PMID: 12615493

5

Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome.

Clark AG, Nielsen R, Signorovitch J, Matise TC, Glanowski S, Heil J, Winn-Deen ES, Holden AL, Lai E. Clark AG, et al. Among authors: nielsen r. Am J Hum Genet. 2003 Aug;73(2):285-300. doi: 10.1086/377138. Epub 2003 Jul 3. Am J Hum Genet. 2003. PMID: 12844287 Free PMC article.

6

Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data.

Nielsen R, Hubisz MJ, Clark AG. Nielsen R, et al. Genetics. 2004 Dec;168(4):2373-82. doi: 10.1534/genetics.104.031039. Epub 2004 Sep 15. Genetics. 2004. PMID: 15371362 Free PMC article.

7

Simultaneous inference of selection and population growth from patterns of variation in the human genome.

Williamson SH, Hernandez R, Fledel-Alon A, Zhu L, Nielsen R, Bustamante CD. Williamson SH, et al. Among authors: nielsen r. Proc Natl Acad Sci U S A. 2005 May 31;102(22):7882-7. doi: 10.1073/pnas.0502300102. Epub 2005 May 19. Proc Natl Acad Sci U S A. 2005. PMID: 15905331 Free PMC article.

8

Natural selection on protein-coding genes in the human genome.

Bustamante CD, Fledel-Alon A, Williamson S, Nielsen R, Hubisz MT, Glanowski S, Tanenbaum DM, White TJ, Sninsky JJ, Hernandez RD, Civello D, Adams MD, Cargill M, Clark AG. Bustamante CD, et al. Among authors: nielsen r. Nature. 2005 Oct 20;437(7062):1153-7. doi: 10.1038/nature04240. Nature. 2005. PMID: 16237444

9

Ascertainment bias in studies of human genome-wide polymorphism.

Clark AG, Hubisz MJ, Bustamante CD, Williamson SH, Nielsen R. Clark AG, et al. Among authors: nielsen r. Genome Res. 2005 Nov;15(11):1496-502. doi: 10.1101/gr.4107905. Genome Res. 2005. PMID: 16251459 Free PMC article.

10

Genomic scans for selective sweeps using SNP data.

Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C. Nielsen R, et al. Genome Res. 2005 Nov;15(11):1566-75. doi: 10.1101/gr.4252305. Genome Res. 2005. PMID: 16251466 Free PMC article.

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