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COMBREX: a project to accelerate the functional annotation of prokaryotic genomes.
Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, Tao KR, Letovsky S, Vitkup D, Segrè D, Salzberg SL, Delisi C, Steffen M, Kasif S. Roberts RJ, et al. Among authors: salzberg sl. Nucleic Acids Res. 2011 Jan;39(Database issue):D11-4. doi: 10.1093/nar/gkq1168. Epub 2010 Nov 21. Nucleic Acids Res. 2011. PMID: 21097892 Free PMC article.
Alignment of whole genomes.
Delcher AL, Kasif S, Fleischmann RD, Peterson J, White O, Salzberg SL. Delcher AL, et al. Among authors: salzberg sl. Nucleic Acids Res. 1999 Jun 1;27(11):2369-76. doi: 10.1093/nar/27.11.2369. Nucleic Acids Res. 1999. PMID: 10325427 Free PMC article.
Improved microbial gene identification with GLIMMER.
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Delcher AL, et al. Among authors: salzberg sl. Nucleic Acids Res. 1999 Dec 1;27(23):4636-41. doi: 10.1093/nar/27.23.4636. Nucleic Acids Res. 1999. PMID: 10556321 Free PMC article.
The COMBREX project: design, methodology, and initial results.
Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S. Anton BP, et al. Among authors: salzberg sl. PLoS Biol. 2013;11(8):e1001638. doi: 10.1371/journal.pbio.1001638. Epub 2013 Aug 27. PLoS Biol. 2013. PMID: 24013487 Free PMC article.
Prediction of operons in microbial genomes.
Ermolaeva MD, White O, Salzberg SL. Ermolaeva MD, et al. Among authors: salzberg sl. Nucleic Acids Res. 2001 Mar 1;29(5):1216-21. doi: 10.1093/nar/29.5.1216. Nucleic Acids Res. 2001. PMID: 11222772 Free PMC article.
402 results