Liu Y - Search Results

1

CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments.

Kuttippurathu L, Hsing M, Liu Y, Schmidt B, Maskell DL, Lee K, He A, Pu WT, Kong SW. Kuttippurathu L, et al. Among authors: liu y. Bioinformatics. 2011 Mar 1;27(5):715-7. doi: 10.1093/bioinformatics/btq707. Epub 2010 Dec 23. Bioinformatics. 2011. PMID: 21183585 Free PMC article.

2

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Bioinformatics. 2010 Aug 15;26(16):1958-64. doi: 10.1093/bioinformatics/btq338. Epub 2010 Jun 23. Bioinformatics. 2010. PMID: 20576627

3

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Bioinformatics. 2012 Jul 15;28(14):1830-7. doi: 10.1093/bioinformatics/bts276. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576173

4

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data.

Liu Y, Schröder J, Schmidt B. Liu Y, et al. Bioinformatics. 2013 Feb 1;29(3):308-15. doi: 10.1093/bioinformatics/bts690. Epub 2012 Nov 29. Bioinformatics. 2013. PMID: 23202746

5

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. BMC Bioinformatics. 2011 Mar 29;12:85. doi: 10.1186/1471-2105-12-85. BMC Bioinformatics. 2011. PMID: 21447171 Free PMC article.

6

Long read alignment based on maximal exact match seeds.

Liu Y, Schmidt B. Liu Y, et al. Bioinformatics. 2012 Sep 15;28(18):i318-i324. doi: 10.1093/bioinformatics/bts414. Bioinformatics. 2012. PMID: 22962447 Free PMC article.

7

MSAProbs-MPI: parallel multiple sequence aligner for distributed-memory systems.

González-Domínguez J, Liu Y, Touriño J, Schmidt B. González-Domínguez J, et al. Among authors: liu y. Bioinformatics. 2016 Dec 15;32(24):3826-3828. doi: 10.1093/bioinformatics/btw558. Epub 2016 Sep 16. Bioinformatics. 2016. PMID: 27638400

8

Parallelized short read assembly of large genomes using de Bruijn graphs.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. BMC Bioinformatics. 2011 Aug 25;12:354. doi: 10.1186/1471-2105-12-354. BMC Bioinformatics. 2011. PMID: 21867511 Free PMC article.

9

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.

Liu Y, Wirawan A, Schmidt B. Liu Y, et al. BMC Bioinformatics. 2013 Apr 4;14:117. doi: 10.1186/1471-2105-14-117. BMC Bioinformatics. 2013. PMID: 23557111 Free PMC article.

10

AFS: identification and quantification of species composition by metagenomic sequencing.

Liu Y, Ripp F, Koeppel R, Schmidt H, Hellmann SL, Weber M, Krombholz CF, Schmidt B, Hankeln T. Liu Y, et al. Bioinformatics. 2017 May 1;33(9):1396-1398. doi: 10.1093/bioinformatics/btw822. Bioinformatics. 2017. PMID: 28453677

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