Wittkop T - Search Results

1

Comprehensive cluster analysis with Transitivity Clustering.

Wittkop T, Emig D, Truss A, Albrecht M, Böcker S, Baumbach J. Wittkop T, et al. Nat Protoc. 2011 Mar;6(3):285-95. doi: 10.1038/nprot.2010.197. Epub 2011 Feb 10. Nat Protoc. 2011. PMID: 21372810

2

Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet.

Baumbach J, Wittkop T, Kleindt CK, Tauch A. Baumbach J, et al. Among authors: wittkop t. Nat Protoc. 2009;4(6):992-1005. doi: 10.1038/nprot.2009.81. Nat Protoc. 2009. PMID: 19498379

3

Partitioning biological data with transitivity clustering.

Wittkop T, Emig D, Lange S, Rahmann S, Albrecht M, Morris JH, Böcker S, Stoye J, Baumbach J. Wittkop T, et al. Nat Methods. 2010 Jun;7(6):419-20. doi: 10.1038/nmeth0610-419. Nat Methods. 2010. PMID: 20508635 No abstract available.

4

Exact and heuristic algorithms for weighted cluster editing.

Rahmann S, Wittkop T, Baumbach J, Martin M, Truss A, Böcker S. Rahmann S, et al. Among authors: wittkop t. Comput Syst Bioinformatics Conf. 2007;6:391-401. Comput Syst Bioinformatics Conf. 2007. PMID: 17951842 Free article.

5

Large scale clustering of protein sequences with FORCE -A layout based heuristic for weighted cluster editing.

Wittkop T, Baumbach J, Lobo FP, Rahmann S. Wittkop T, et al. BMC Bioinformatics. 2007 Oct 17;8:396. doi: 10.1186/1471-2105-8-396. BMC Bioinformatics. 2007. PMID: 17941985 Free PMC article.

6

clusterMaker: a multi-algorithm clustering plugin for Cytoscape.

Morris JH, Apeltsin L, Newman AM, Baumbach J, Wittkop T, Su G, Bader GD, Ferrin TE. Morris JH, et al. Among authors: wittkop t. BMC Bioinformatics. 2011 Nov 9;12:436. doi: 10.1186/1471-2105-12-436. BMC Bioinformatics. 2011. PMID: 22070249 Free PMC article.

7

Efficient online transcription factor binding site adjustment by integrating transitive graph projection with MoRAine 2.0.

Wittkop T, Rahmann S, Baumbach J. Wittkop T, et al. J Integr Bioinform. 2010 Mar 25;7(3). doi: 10.2390/biecoll-jib-2010-117. J Integr Bioinform. 2010. PMID: 20375458 Free article.

8

Density parameter estimation for finding clusters of homologous proteins--tracing actinobacterial pathogenicity lifestyles.

Röttger R, Kalaghatgi P, Sun P, Soares Sde C, Azevedo V, Wittkop T, Baumbach J. Röttger R, et al. Among authors: wittkop t. Bioinformatics. 2013 Jan 15;29(2):215-22. doi: 10.1093/bioinformatics/bts653. Epub 2012 Nov 9. Bioinformatics. 2013. PMID: 23142964

9

CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli.

Baumbach J, Wittkop T, Rademacher K, Rahmann S, Brinkrolf K, Tauch A. Baumbach J, et al. Among authors: wittkop t. J Biotechnol. 2007 Apr 30;129(2):279-89. doi: 10.1016/j.jbiotec.2006.12.012. Epub 2006 Dec 20. J Biotechnol. 2007. PMID: 17229482

10

MoRAine--a web server for fast computational transcription factor binding motif re-annotation.

Baumbach J, Wittkop T, Weile J, Kohl T, Rahmann S. Baumbach J, et al. Among authors: wittkop t. J Integr Bioinform. 2008 Aug 25;5(2). doi: 10.2390/biecoll-jib-2008-91. J Integr Bioinform. 2008. PMID: 20134062

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