Ji H - Search Results

1

Using CisGenome to analyze ChIP-chip and ChIP-seq data.

Ji H, Jiang H, Ma W, Wong WH. Ji H, et al. Curr Protoc Bioinformatics. 2011 Mar;Chapter 2:Unit2.13. doi: 10.1002/0471250953.bi0213s33. Curr Protoc Bioinformatics. 2011. PMID: 21400695 Free PMC article.

2

TileMap: create chromosomal map of tiling array hybridizations.

Ji H, Wong WH. Ji H, et al. Bioinformatics. 2005 Sep 15;21(18):3629-36. doi: 10.1093/bioinformatics/bti593. Epub 2005 Jul 26. Bioinformatics. 2005. PMID: 16046496

3

An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse.

Kim RS, Ji H, Wong WH. Kim RS, et al. Among authors: ji h. BMC Bioinformatics. 2006 Jan 26;7:44. doi: 10.1186/1471-2105-7-44. BMC Bioinformatics. 2006. PMID: 16438730 Free PMC article.

4

Computational biology: toward deciphering gene regulatory information in mammalian genomes.

Ji H, Wong WH. Ji H, et al. Biometrics. 2006 Sep;62(3):645-63. doi: 10.1111/j.1541-0420.2006.00625.x. Biometrics. 2006. PMID: 16984301 Review.

5

A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors.

Ji H, Vokes SA, Wong WH. Ji H, et al. Nucleic Acids Res. 2006;34(21):e146. doi: 10.1093/nar/gkl803. Epub 2006 Nov 7. Nucleic Acids Res. 2006. PMID: 17090591 Free PMC article.

6

Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning.

Vokes SA, Ji H, McCuine S, Tenzen T, Giles S, Zhong S, Longabaugh WJ, Davidson EH, Wong WH, McMahon AP. Vokes SA, et al. Among authors: ji h. Development. 2007 May;134(10):1977-89. doi: 10.1242/dev.001966. Epub 2007 Apr 18. Development. 2007. PMID: 17442700 Free article.

7

A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb.

Vokes SA, Ji H, Wong WH, McMahon AP. Vokes SA, et al. Among authors: ji h. Genes Dev. 2008 Oct 1;22(19):2651-63. doi: 10.1101/gad.1693008. Genes Dev. 2008. PMID: 18832070 Free PMC article.

8

An integrated software system for analyzing ChIP-chip and ChIP-seq data.

Ji H, Jiang H, Ma W, Johnson DS, Myers RM, Wong WH. Ji H, et al. Nat Biotechnol. 2008 Nov;26(11):1293-300. doi: 10.1038/nbt.1505. Epub 2008 Nov 2. Nat Biotechnol. 2008. PMID: 18978777 Free PMC article.

9

Modeling the spatio-temporal network that drives patterning in the vertebrate central nervous system.

Nishi Y, Ji H, Wong WH, McMahon AP, Vokes SA. Nishi Y, et al. Among authors: ji h. Biochim Biophys Acta. 2009 Apr;1789(4):299-305. doi: 10.1016/j.bbagrm.2009.01.002. Biochim Biophys Acta. 2009. PMID: 19445894 Review.

10

TileProbe: modeling tiling array probe effects using publicly available data.

Judy JT, Ji H. Judy JT, et al. Among authors: ji h. Bioinformatics. 2009 Sep 15;25(18):2369-75. doi: 10.1093/bioinformatics/btp425. Epub 2009 Jul 9. Bioinformatics. 2009. PMID: 19592393 Free PMC article.

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