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Using CisGenome to analyze ChIP-chip and ChIP-seq data.
Ji H, Jiang H, Ma W, Wong WH. Ji H, et al. Among authors: ma w. Curr Protoc Bioinformatics. 2011 Mar;Chapter 2:Unit2.13. doi: 10.1002/0471250953.bi0213s33. Curr Protoc Bioinformatics. 2011. PMID: 21400695 Free PMC article.
The analysis of ChIP-Seq data.
Ma W, Wong WH. Ma W, et al. Methods Enzymol. 2011;497:51-73. doi: 10.1016/B978-0-12-385075-1.00003-2. Methods Enzymol. 2011. PMID: 21601082
Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning.
Peterson KA, Nishi Y, Ma W, Vedenko A, Shokri L, Zhang X, McFarlane M, Baizabal JM, Junker JP, van Oudenaarden A, Mikkelsen T, Bernstein BE, Bailey TL, Bulyk ML, Wong WH, McMahon AP. Peterson KA, et al. Among authors: ma w. Genes Dev. 2012 Dec 15;26(24):2802-16. doi: 10.1101/gad.207142.112. Genes Dev. 2012. PMID: 23249739 Free PMC article.
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