Liu Y - Search Results

1

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. BMC Bioinformatics. 2011 Mar 29;12:85. doi: 10.1186/1471-2105-12-85. BMC Bioinformatics. 2011. PMID: 21447171 Free PMC article.

2

CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.

Liu Y, Maskell DL, Schmidt B. Liu Y, et al. BMC Res Notes. 2009 May 6;2:73. doi: 10.1186/1756-0500-2-73. BMC Res Notes. 2009. PMID: 19416548 Free PMC article.

3

CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. BMC Res Notes. 2010 Apr 6;3:93. doi: 10.1186/1756-0500-3-93. BMC Res Notes. 2010. PMID: 20370891 Free PMC article.

4

MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Bioinformatics. 2010 Aug 15;26(16):1958-64. doi: 10.1093/bioinformatics/btq338. Epub 2010 Jun 23. Bioinformatics. 2010. PMID: 20576627

5

Parallelized short read assembly of large genomes using de Bruijn graphs.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. BMC Bioinformatics. 2011 Aug 25;12:354. doi: 10.1186/1471-2105-12-354. BMC Bioinformatics. 2011. PMID: 21867511 Free PMC article.

6

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Bioinformatics. 2012 Jul 15;28(14):1830-7. doi: 10.1093/bioinformatics/bts276. Epub 2012 May 9. Bioinformatics. 2012. PMID: 22576173

7

CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.

Liu Y, Wirawan A, Schmidt B. Liu Y, et al. BMC Bioinformatics. 2013 Apr 4;14:117. doi: 10.1186/1471-2105-14-117. BMC Bioinformatics. 2013. PMID: 23557111 Free PMC article.

8

HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data.

Wirawan A, Harris RS, Liu Y, Schmidt B, Schröder J. Wirawan A, et al. Among authors: liu y. BMC Bioinformatics. 2014 May 6;15:131. doi: 10.1186/1471-2105-15-131. BMC Bioinformatics. 2014. PMID: 24885381 Free PMC article.

9

Long read alignment based on maximal exact match seeds.

Liu Y, Schmidt B. Liu Y, et al. Bioinformatics. 2012 Sep 15;28(18):i318-i324. doi: 10.1093/bioinformatics/bts414. Bioinformatics. 2012. PMID: 22962447 Free PMC article.

10

Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data.

Liu Y, Schröder J, Schmidt B. Liu Y, et al. Bioinformatics. 2013 Feb 1;29(3):308-15. doi: 10.1093/bioinformatics/bts690. Epub 2012 Nov 29. Bioinformatics. 2013. PMID: 23202746

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