Schmidt B - Search Results

1

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. BMC Bioinformatics. 2011 Mar 29;12:85. doi: 10.1186/1471-2105-12-85. BMC Bioinformatics. 2011. PMID: 21447171 Free PMC article.

2

Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.

Oliver T, Schmidt B, Nathan D, Clemens R, Maskell D. Oliver T, et al. Among authors: schmidt b. Bioinformatics. 2005 Aug 15;21(16):3431-2. doi: 10.1093/bioinformatics/bti508. Epub 2005 May 26. Bioinformatics. 2005. PMID: 15919726

3

High-speed multiple sequence alignment on a reconfigurable platform.

Oliver T, Schmidt B, Maskell D, Nathan D, Clemens R. Oliver T, et al. Among authors: schmidt b. Int J Bioinform Res Appl. 2006;2(4):394-406. doi: 10.1504/IJBRA.2006.011038. Int J Bioinform Res Appl. 2006. PMID: 18048180

4

CBESW: sequence alignment on the Playstation 3.

Wirawan A, Kwoh CK, Hieu NT, Schmidt B. Wirawan A, et al. Among authors: schmidt b. BMC Bioinformatics. 2008 Sep 17;9:377. doi: 10.1186/1471-2105-9-377. BMC Bioinformatics. 2008. PMID: 18798993 Free PMC article.

5

High speed biological sequence analysis with hidden Markov models on reconfigurable platforms.

Oliver TF, Schmidt B, Jakop Y, Maskell DL. Oliver TF, et al. Among authors: schmidt b. IEEE Trans Inf Technol Biomed. 2009 Sep;13(5):740-6. doi: 10.1109/TITB.2007.904632. Epub 2008 Jun 10. IEEE Trans Inf Technol Biomed. 2009. PMID: 19273034

6

CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.

Liu Y, Maskell DL, Schmidt B. Liu Y, et al. Among authors: schmidt b. BMC Res Notes. 2009 May 6;2:73. doi: 10.1186/1756-0500-2-73. BMC Res Notes. 2009. PMID: 19416548 Free PMC article.

7

A fast hybrid short read fragment assembly algorithm.

Schmidt B, Sinha R, Beresford-Smith B, Puglisi SJ. Schmidt B, et al. Bioinformatics. 2009 Sep 1;25(17):2279-80. doi: 10.1093/bioinformatics/btp374. Epub 2009 Jun 17. Bioinformatics. 2009. PMID: 19535537

8

Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architectures.

Wirawan A, Kwoh CK, Schmidt B. Wirawan A, et al. Among authors: schmidt b. Bioinformatics. 2010 May 15;26(10):1368-9. doi: 10.1093/bioinformatics/btq135. Epub 2010 Mar 26. Bioinformatics. 2010. PMID: 20348545

9

CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions.

Liu Y, Schmidt B, Maskell DL. Liu Y, et al. Among authors: schmidt b. BMC Res Notes. 2010 Apr 6;3:93. doi: 10.1186/1756-0500-3-93. BMC Res Notes. 2010. PMID: 20370891 Free PMC article.

10

A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware.

Shi H, Schmidt B, Liu W, Müller-Wittig W. Shi H, et al. Among authors: schmidt b. J Comput Biol. 2010 Apr;17(4):603-15. doi: 10.1089/cmb.2009.0062. J Comput Biol. 2010. PMID: 20426693

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