Nesvizhskii AI - Search Results

1

Prestroke proteomic changes in cerebral microvessels in stroke-prone, transgenic[hCETP]-Hyperlipidemic, Dahl salt-sensitive hypertensive rats.

Bergerat A, Decano J, Wu CJ, Choi H, Nesvizhskii AI, Moran AM, Ruiz-Opazo N, Steffen M, Herrera VL. Bergerat A, et al. Among authors: nesvizhskii ai. Mol Med. 2011;17(7-8):588-98. doi: 10.2119/molmed.2010.00228. Epub 2011 Apr 14. Mol Med. 2011. PMID: 21519634 Free PMC article.

2

False discovery rates and related statistical concepts in mass spectrometry-based proteomics.

Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):47-50. doi: 10.1021/pr700747q. Epub 2007 Dec 8. J Proteome Res. 2008. PMID: 18067251

3

Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling.

Choi H, Ghosh D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):286-92. doi: 10.1021/pr7006818. Epub 2007 Dec 14. J Proteome Res. 2008. PMID: 18078310

4

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

Choi H, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Jan;7(1):254-65. doi: 10.1021/pr070542g. Epub 2007 Dec 27. J Proteome Res. 2008. PMID: 18159924

5

Significance analysis of spectral count data in label-free shotgun proteomics.

Choi H, Fermin D, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2008 Dec;7(12):2373-85. doi: 10.1074/mcp.M800203-MCP200. Epub 2008 Jul 20. Mol Cell Proteomics. 2008. PMID: 18644780 Free PMC article.

6

Adaptive discriminant function analysis and reranking of MS/MS database search results for improved peptide identification in shotgun proteomics.

Ding Y, Choi H, Nesvizhskii AI. Ding Y, et al. Among authors: nesvizhskii ai. J Proteome Res. 2008 Nov;7(11):4878-89. doi: 10.1021/pr800484x. Epub 2008 Sep 13. J Proteome Res. 2008. PMID: 18788775 Free PMC article.

7

Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data.

Choi H, Nesvizhskii AI, Ghosh D, Qin ZS. Choi H, et al. Among authors: nesvizhskii ai. Bioinformatics. 2009 Jul 15;25(14):1715-21. doi: 10.1093/bioinformatics/btp312. Epub 2009 May 14. Bioinformatics. 2009. PMID: 19447789 Free PMC article.

8

Analysis of protein complexes through model-based biclustering of label-free quantitative AP-MS data.

Choi H, Kim S, Gingras AC, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Mol Syst Biol. 2010 Jun 22;6:385. doi: 10.1038/msb.2010.41. Mol Syst Biol. 2010. PMID: 20571534 Free PMC article.

9

SAINT: probabilistic scoring of affinity purification-mass spectrometry data.

Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI. Choi H, et al. Among authors: nesvizhskii ai. Nat Methods. 2011 Jan;8(1):70-3. doi: 10.1038/nmeth.1541. Epub 2010 Dec 5. Nat Methods. 2011. PMID: 21131968 Free PMC article.

10

MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines.

Kwon T, Choi H, Vogel C, Nesvizhskii AI, Marcotte EM. Kwon T, et al. Among authors: nesvizhskii ai. J Proteome Res. 2011 Jul 1;10(7):2949-58. doi: 10.1021/pr2002116. Epub 2011 Apr 29. J Proteome Res. 2011. PMID: 21488652 Free PMC article.

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