Pires JC - Search Results

1

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.

Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J. Zuccolo A, et al. Among authors: pires jc. Genome Biol. 2011;12(5):R48. doi: 10.1186/gb-2011-12-5-r48. Epub 2011 May 27. Genome Biol. 2011. PMID: 21619600 Free PMC article.

2

Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA).

Leebens-Mack J, Vision T, Brenner E, Bowers JE, Cannon S, Clement MJ, Cunningham CW, dePamphilis C, deSalle R, Doyle JJ, Eisen JA, Gu X, Harshman J, Jansen RK, Kellogg EA, Koonin EV, Mishler BD, Philippe H, Pires JC, Qiu YL, Rhee SY, Sjölander K, Soltis DE, Soltis PS, Stevenson DW, Wall K, Warnow T, Zmasek C. Leebens-Mack J, et al. Among authors: pires jc. OMICS. 2006 Summer;10(2):231-7. doi: 10.1089/omi.2006.10.231. OMICS. 2006. PMID: 16901231 Free PMC article. Review.

3

Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae).

Lim KY, Soltis DE, Soltis PS, Tate J, Matyasek R, Srubarova H, Kovarik A, Pires JC, Xiong Z, Leitch AR. Lim KY, et al. Among authors: pires jc. PLoS One. 2008;3(10):e3353. doi: 10.1371/journal.pone.0003353. Epub 2008 Oct 9. PLoS One. 2008. PMID: 18843372 Free PMC article.

4

Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence.

Cheung F, Trick M, Drou N, Lim YP, Park JY, Kwon SJ, Kim JA, Scott R, Pires JC, Paterson AH, Town C, Bancroft I. Cheung F, et al. Among authors: pires jc. Plant Cell. 2009 Jul;21(7):1912-28. doi: 10.1105/tpc.108.060376. Epub 2009 Jul 14. Plant Cell. 2009. PMID: 19602626 Free PMC article.

5

Complexity of genome evolution by segmental rearrangement in Brassica rapa revealed by sequence-level analysis.

Trick M, Kwon SJ, Choi SR, Fraser F, Soumpourou E, Drou N, Wang Z, Lee SY, Yang TJ, Mun JH, Paterson AH, Town CD, Pires JC, Pyo Lim Y, Park BS, Bancroft I. Trick M, et al. Among authors: pires jc. BMC Genomics. 2009 Nov 18;10:539. doi: 10.1186/1471-2164-10-539. BMC Genomics. 2009. PMID: 19922648 Free PMC article.

6

Identification of shared single copy nuclear genes in Arabidopsis, Populus, Vitis and Oryza and their phylogenetic utility across various taxonomic levels.

Duarte JM, Wall PK, Edger PP, Landherr LL, Ma H, Pires JC, Leebens-Mack J, dePamphilis CW. Duarte JM, et al. Among authors: pires jc. BMC Evol Biol. 2010 Feb 24;10:61. doi: 10.1186/1471-2148-10-61. BMC Evol Biol. 2010. PMID: 20181251 Free PMC article.

7

Integration of genetic, physical, and cytogenetic maps for Brassica rapa chromosome A7.

Xiong Z, Kim JS, Pires JC. Xiong Z, et al. Among authors: pires jc. Cytogenet Genome Res. 2010 Jul;129(1-3):190-8. doi: 10.1159/000314640. Epub 2010 Jul 13. Cytogenet Genome Res. 2010. PMID: 20628251

8

Introgression of B-genome chromosomes in a doubled haploid population of Brassica napus x B. carinata.

Navabi ZK, Parkin IA, Pires JC, Xiong Z, Thiagarajah MR, Good AG, Rahman MH. Navabi ZK, et al. Among authors: pires jc. Genome. 2010 Aug;53(8):619-29. doi: 10.1139/g10-039. Genome. 2010. PMID: 20725149

9

Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors.

Xiong Z, Pires JC. Xiong Z, et al. Among authors: pires jc. Genetics. 2011 Jan;187(1):37-49. doi: 10.1534/genetics.110.122473. Epub 2010 Nov 1. Genetics. 2011. PMID: 21041557 Free PMC article.

10

Homoeologous shuffling and chromosome compensation maintain genome balance in resynthesized allopolyploid Brassica napus.

Xiong Z, Gaeta RT, Pires JC. Xiong Z, et al. Among authors: pires jc. Proc Natl Acad Sci U S A. 2011 May 10;108(19):7908-13. doi: 10.1073/pnas.1014138108. Epub 2011 Apr 21. Proc Natl Acad Sci U S A. 2011. PMID: 21512129 Free PMC article.

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